Lfl_g02186 (PUB38, ATPUB38)

Aliases : PUB38, ATPUB38

Description : U-Box-group-II E3 ubiquitin ligase & original description: none

Gene families : OG0004266 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004266_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Lfl_g02186

Target	Alias	Description	ECC score	Gene Family Method
Aop_g04662	PUB38, ATPUB38	U-Box-group-II E3 ubiquitin ligase & original description: none	0.03	OrthoFinder output from all 47 species
Ceric.02G042800.1	ATPUB45, PUB45,...	U-Box-group-II E3 ubiquitin ligase & original...	0.03	OrthoFinder output from all 47 species
Ceric.02G044300.1	ATPUB45, PUB45,...	U-Box-group-II E3 ubiquitin ligase & original...	0.03	OrthoFinder output from all 47 species
Dcu_g40033	PUB38, ATPUB38	U-Box-group-II E3 ubiquitin ligase & original description: none	0.03	OrthoFinder output from all 47 species
Ehy_g03795	PUB39	U-Box-group-II E3 ubiquitin ligase & original description: none	0.03	OrthoFinder output from all 47 species
Gb_13006	PUB38, ATPUB38	E3 ubiquitin ligase (PUB)	0.04	OrthoFinder output from all 47 species
LOC_Os09g21740.1	PUB38, ATPUB38,...	E3 ubiquitin ligase (PUB)	0.03	OrthoFinder output from all 47 species
Mp1g18000.1	PUB38, ATPUB38	E3 ubiquitin ligase (PUB)	0.03	OrthoFinder output from all 47 species
Msp_g15300	No alias	U-Box-group-II E3 ubiquitin ligase & original description: none	0.03	OrthoFinder output from all 47 species
Ore_g04981	PUB13, ATPUB13	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Pir_g12203	No alias	U-Box-group-II E3 ubiquitin ligase & original description: none	0.03	OrthoFinder output from all 47 species
Smo90666	PUB39	U-box domain-containing protein 38 OS=Arabidopsis thaliana	0.05	OrthoFinder output from all 47 species
Solyc03g113870.1.1	PUB38, ATPUB38,...	E3 ubiquitin ligase (PUB)	0.04	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004842	ubiquitin-protein transferase activity	IEA	Interproscan
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0016567	protein ubiquitination	IEA	Interproscan
MF	GO:0016740	transferase activity	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
MF	GO:0019787	ubiquitin-like protein transferase activity	None	Extended
BP	GO:0032446	protein modification by small protein conjugation	None	Extended
BP	GO:0036211	protein modification process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0070647	protein modification by small protein conjugation or removal	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0140096	catalytic activity, acting on a protein	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0004672	protein kinase activity	IEP	HCCA
BP	GO:0006468	protein phosphorylation	IEP	HCCA
MF	GO:0016301	kinase activity	IEP	HCCA
BP	GO:0016310	phosphorylation	IEP	HCCA
MF	GO:0016773	phosphotransferase activity, alcohol group as acceptor	IEP	HCCA
MF	GO:0043565	sequence-specific DNA binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR000225	Armadillo	372	411
IPR003613	Ubox_domain	4	68

External Links

No external refs found!

Lfl_g02186 (PUB38, ATPUB38)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation