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  5. Ala_g16408

Ala_g16408


Description : EC_4.2 carbon-oxygen lyase & original description: none


Gene families : OG0000492 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000492_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ala_g16408

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00039p00186640 evm_27.TU.AmTr_v1... Cell wall.pectin.modification and degradation.pectate lyase 0.04 OrthoFinder output from all 47 species
AMTR_s00039p00189000 evm_27.TU.AmTr_v1... Cell wall.pectin.modification and degradation.pectate lyase 0.02 OrthoFinder output from all 47 species
AT1G30350 No alias Pectin lyase-like superfamily protein 0.03 OrthoFinder output from all 47 species
AT1G67750 No alias Pectate lyase family protein 0.02 OrthoFinder output from all 47 species
AT3G07010 No alias Pectin lyase-like superfamily protein 0.03 OrthoFinder output from all 47 species
AT4G13210 No alias Pectin lyase-like superfamily protein 0.03 OrthoFinder output from all 47 species
AT4G13710 No alias Pectin lyase-like superfamily protein 0.03 OrthoFinder output from all 47 species
AT5G48900 No alias Pectin lyase-like superfamily protein 0.03 OrthoFinder output from all 47 species
AT5G55720 No alias Pectin lyase-like superfamily protein 0.04 OrthoFinder output from all 47 species
Aev_g19777 No alias EC_4.2 carbon-oxygen lyase & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g38995 RHS14 EC_4.2 carbon-oxygen lyase & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g23901 RHS14 EC_4.2 carbon-oxygen lyase & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g20815 No alias EC_4.2 carbon-oxygen lyase & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g21580 No alias EC_4.2 carbon-oxygen lyase & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g63228 No alias EC_4.2 carbon-oxygen lyase & original description: none 0.05 OrthoFinder output from all 47 species
Aop_g65574 No alias EC_4.2 carbon-oxygen lyase & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene12080.t1 Aspi01Gene12080 EC_4.2 carbon-oxygen lyase & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0008.g011291 No alias EC_4.2 carbon-oxygen lyase & original description: CDS=272-1573 0.02 OrthoFinder output from all 47 species
Azfi_s0054.g033628 RHS14 EC_4.2 carbon-oxygen lyase & original description: CDS=168-1388 0.03 OrthoFinder output from all 47 species
Ceric.22G068000.1 Ceric.22G068000 EC_4.2 carbon-oxygen lyase & original description:... 0.02 OrthoFinder output from all 47 species
Ceric.34G020500.1 Ceric.34G020500 EC_4.2 carbon-oxygen lyase & original description:... 0.03 OrthoFinder output from all 47 species
Dac_g11741 No alias EC_4.2 carbon-oxygen lyase & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g12057 No alias EC_4.2 carbon-oxygen lyase & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g43847 No alias EC_4.2 carbon-oxygen lyase & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g29530 No alias EC_4.2 carbon-oxygen lyase & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g40377 No alias EC_4.2 carbon-oxygen lyase & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g46389 No alias EC_4.2 carbon-oxygen lyase & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g03656 No alias EC_4.2 carbon-oxygen lyase & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01000592001 No alias Cell wall.pectin.modification and degradation.pectate lyase 0.02 OrthoFinder output from all 47 species
GSVIVT01003984001 No alias Cell wall.pectin.modification and degradation.pectate lyase 0.03 OrthoFinder output from all 47 species
GSVIVT01014682001 No alias Cell wall.pectin.modification and degradation.pectate lyase 0.03 OrthoFinder output from all 47 species
GSVIVT01029048001 No alias Cell wall.pectin.modification and degradation.pectate lyase 0.03 OrthoFinder output from all 47 species
LOC_Os04g05050.1 LOC_Os04g05050 pectate lyase 0.03 OrthoFinder output from all 47 species
Len_g10584 No alias EC_4.2 carbon-oxygen lyase & original description: none 0.03 OrthoFinder output from all 47 species
Len_g50590 No alias EC_4.2 carbon-oxygen lyase & original description: none 0.03 OrthoFinder output from all 47 species
MA_101171g0010 No alias pectate lyase 0.05 OrthoFinder output from all 47 species
MA_10205415g0010 No alias pectate lyase 0.03 OrthoFinder output from all 47 species
MA_10353668g0010 No alias pectate lyase 0.03 OrthoFinder output from all 47 species
MA_103716g0010 No alias pectate lyase 0.03 OrthoFinder output from all 47 species
MA_10426822g0020 No alias pectate lyase 0.04 OrthoFinder output from all 47 species
MA_10430145g0030 No alias pectate lyase 0.04 OrthoFinder output from all 47 species
MA_1164682g0010 No alias pectate lyase 0.02 OrthoFinder output from all 47 species
MA_203992g0010 No alias pectate lyase 0.05 OrthoFinder output from all 47 species
MA_62112g0010 No alias pectate lyase 0.04 OrthoFinder output from all 47 species
MA_66914g0010 No alias pectate lyase 0.05 OrthoFinder output from all 47 species
MA_91467g0010 No alias pectate lyase 0.02 OrthoFinder output from all 47 species
MA_91467g0020 No alias pectate lyase 0.05 OrthoFinder output from all 47 species
MA_956526g0010 No alias pectate lyase 0.03 OrthoFinder output from all 47 species
MA_97947g0010 No alias pectate lyase 0.05 OrthoFinder output from all 47 species
Mp8g00770.1 No alias pectate lyase 0.03 OrthoFinder output from all 47 species
Ore_g26214 No alias EC_4.2 carbon-oxygen lyase & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g28391 No alias EC_4.2 carbon-oxygen lyase & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g41164 No alias EC_4.2 carbon-oxygen lyase & original description: none 0.05 OrthoFinder output from all 47 species
Ore_g41165 No alias EC_4.2 carbon-oxygen lyase & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g06396 No alias EC_4.2 carbon-oxygen lyase & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g27978 No alias EC_4.2 carbon-oxygen lyase & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0006.g003136 No alias EC_4.2 carbon-oxygen lyase & original description: CDS=1-1299 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0093.g019058 No alias EC_4.2 carbon-oxygen lyase & original description: CDS=1-1206 0.03 OrthoFinder output from all 47 species
Smo407495 No alias Cell wall.pectin.modification and degradation.pectate lyase 0.04 OrthoFinder output from all 47 species
Solyc02g093580.4.1 Solyc02g093580 pectate lyase 0.02 OrthoFinder output from all 47 species
Solyc03g111690.4.1 Solyc03g111690 pectate lyase 0.03 OrthoFinder output from all 47 species
Solyc06g071840.3.1 Solyc06g071840 Probable pectate lyase 22 OS=Arabidopsis thaliana... 0.01 OrthoFinder output from all 47 species
Solyc06g083580.4.1 Solyc06g083580 pectate lyase 0.03 OrthoFinder output from all 47 species
Solyc09g061890.3.1 Solyc09g061890 pectate lyase 0.02 OrthoFinder output from all 47 species
Solyc11g008140.3.1 Solyc11g008140 pectate lyase 0.02 OrthoFinder output from all 47 species
Tin_g09317 No alias EC_4.2 carbon-oxygen lyase & original description: none 0.05 OrthoFinder output from all 47 species
Zm00001e008755_P002 Zm00001e008755 pectate lyase 0.01 OrthoFinder output from all 47 species
Zm00001e040624_P001 Zm00001e040624 pectate lyase 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP HCCA
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP HCCA
InterPro domains Description Start Stop
IPR002022 Pec_lyase 204 383
No external refs found!