Ala_g15870

Description : not classified & original description: none

Gene families : OG0000629 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000629_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Ala_g15870
Cluster	HCCA: Cluster_124

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00025p00230510	evm_27.TU.AmTr_v1...	DExH-box ATP-dependent RNA helicase DExH7, chloroplastic...	0.02	OrthoFinder output from all 47 species
Adi_g105502	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Azfi_s0022.g015910	No alias	not classified & original description: CDS=1-1104	0.03	OrthoFinder output from all 47 species
Cba_g75305	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Ceric.20G077000.1	Ceric.20G077000	not classified & original description: pacid=50565979...	0.02	OrthoFinder output from all 47 species
Dcu_g44577	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Len_g19148	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
MA_10437209g0010	No alias	DExH-box ATP-dependent RNA helicase DExH3 OS=Arabidopsis...	0.03	OrthoFinder output from all 47 species
Msp_g36064	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Ore_g10298	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Ppi_g14536	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Smo419303	No alias	Protein biosynthesis.aminoacyl-tRNA synthetase...	0.04	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0003723	RNA binding	IEP	HCCA
MF	GO:0004175	endopeptidase activity	IEP	HCCA
MF	GO:0004176	ATP-dependent peptidase activity	IEP	HCCA
MF	GO:0004222	metalloendopeptidase activity	IEP	HCCA
MF	GO:0008237	metallopeptidase activity	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR007502	Helicase-assoc_dom	743	816
IPR001650	Helicase_C	548	679
IPR011545	DEAD/DEAH_box_helicase_dom	286	442
IPR014720	dsRBD_dom	1083	1143
IPR011709	DEAD-box_helicase_OB_fold	901	981

External Links

No external refs found!