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  5. Lfl_g01584

Lfl_g01584 (ATSYP41, ATTLG2A, SYP41)


Aliases : ATSYP41, ATTLG2A, SYP41

Description : Qa-type SYP4-group component of SNARE membrane fusion complex & original description: none


Gene families : OG0004092 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004092_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Lfl_g01584

Target Alias Description ECC score Gene Family Method Actions
AT3G05710 SYP43, ATSYP43 syntaxin of plants 43 0.03 OrthoFinder output from all 47 species
Ala_g01909 SYP43, ATSYP43 Qa-type SYP4-group component of SNARE membrane fusion... 0.03 OrthoFinder output from all 47 species
Aop_g02821 SYP43, ATSYP43 Qa-type SYP4-group component of SNARE membrane fusion... 0.03 OrthoFinder output from all 47 species
Azfi_s0212.g058193 ATSYP41, ATTLG2A, SYP41 Qa-type SYP4-group component of SNARE membrane fusion... 0.03 OrthoFinder output from all 47 species
Cre12.g507450 ATSYP41, ATTLG2A, SYP41 Vesicle trafficking.SNARE target membrane recognition... 0.02 OrthoFinder output from all 47 species
Pir_g08078 ATSYP41, ATTLG2A, SYP41 Qa-type SYP4-group component of SNARE membrane fusion... 0.04 OrthoFinder output from all 47 species
Zm00001e016500_P001 SYP43, ATSYP43,... SYP4-group Qa-type SNARE component 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000139 Golgi membrane IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0005338 nucleotide-sugar transmembrane transporter activity IEP HCCA
MF GO:0005488 binding IEP HCCA
BP GO:0008104 protein localization IEP HCCA
MF GO:0015165 pyrimidine nucleotide-sugar transmembrane transporter activity IEP HCCA
BP GO:0015780 nucleotide-sugar transmembrane transport IEP HCCA
BP GO:0015931 nucleobase-containing compound transport IEP HCCA
MF GO:0015932 nucleobase-containing compound transmembrane transporter activity IEP HCCA
BP GO:0022607 cellular component assembly IEP HCCA
CC GO:0031090 organelle membrane IEP HCCA
BP GO:0033036 macromolecule localization IEP HCCA
BP GO:0043248 proteasome assembly IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
BP GO:0045048 protein insertion into ER membrane IEP HCCA
BP GO:0045184 establishment of protein localization IEP HCCA
BP GO:0051179 localization IEP HCCA
BP GO:0051205 protein insertion into membrane IEP HCCA
BP GO:0051234 establishment of localization IEP HCCA
BP GO:0051641 cellular localization IEP HCCA
BP GO:0051668 localization within membrane IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
BP GO:0070727 cellular macromolecule localization IEP HCCA
BP GO:0071702 organic substance transport IEP HCCA
BP GO:0071705 nitrogen compound transport IEP HCCA
BP GO:0072657 protein localization to membrane IEP HCCA
BP GO:0090150 establishment of protein localization to membrane IEP HCCA
BP GO:0090481 pyrimidine nucleotide-sugar transmembrane transport IEP HCCA
CC GO:0098588 bounding membrane of organelle IEP HCCA
BP GO:1901264 carbohydrate derivative transport IEP HCCA
MF GO:1901505 carbohydrate derivative transmembrane transporter activity IEP HCCA
InterPro domains Description Start Stop
IPR000727 T_SNARE_dom 261 313
No external refs found!