Ala_g15646

Description : E4 polyubiquitination factor *(UFD2) & original description: none

Gene families : OG0003921 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003921_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Ala_g15646
Cluster	HCCA: Cluster_145

Target	Alias	Description	ECC score	Gene Family Method
AT5G15400	No alias	U-box domain-containing protein	0.03	OrthoFinder output from all 47 species
Aop_g29326	No alias	E4 polyubiquitination factor *(UFD2) & original description: none	0.03	OrthoFinder output from all 47 species
Ceric.11G013400.1	Ceric.11G013400	E4 polyubiquitination factor *(UFD2) & original...	0.06	OrthoFinder output from all 47 species
Dcu_g39853	No alias	E4 polyubiquitination factor *(UFD2) & original description: none	0.07	OrthoFinder output from all 47 species
GSVIVT01011484001	No alias	Probable ubiquitin conjugation factor E4 OS=Arabidopsis thaliana	0.06	OrthoFinder output from all 47 species
Gb_15414	No alias	E4 multiubiquitination enzyme (UFD2)	0.03	OrthoFinder output from all 47 species
Lfl_g02372	No alias	E4 polyubiquitination factor *(UFD2) & original description: none	0.05	OrthoFinder output from all 47 species
MA_10239725g0010	No alias	E4 multiubiquitination enzyme (UFD2)	0.02	OrthoFinder output from all 47 species
MA_16148g0010	No alias	E4 multiubiquitination enzyme (UFD2)	0.03	OrthoFinder output from all 47 species
MA_24841g0010	No alias	Probable ubiquitin conjugation factor E4 OS=Arabidopsis...	0.03	OrthoFinder output from all 47 species
Mp6g01260.1	No alias	E4 multiubiquitination enzyme (UFD2)	0.03	OrthoFinder output from all 47 species
Ore_g08916	No alias	E4 polyubiquitination factor *(UFD2) & original description: none	0.05	OrthoFinder output from all 47 species
Pir_g13038	No alias	E4 polyubiquitination factor *(UFD2) & original description: none	0.05	OrthoFinder output from all 47 species
Sam_g10578	No alias	E4 polyubiquitination factor *(UFD2) & original description: none	0.04	OrthoFinder output from all 47 species
Smo142432	No alias	Probable ubiquitin conjugation factor E4 OS=Arabidopsis thaliana	0.04	OrthoFinder output from all 47 species
Spa_g00475	No alias	E4 polyubiquitination factor *(UFD2) & original description: none	0.03	OrthoFinder output from all 47 species
Tin_g08695	No alias	E4 polyubiquiTination factor *(UFD2) & original description: none	0.05	OrthoFinder output from all 47 species
Zm00001e002031_P002	Zm00001e002031	E4 multiubiquitination enzyme (UFD2)	0.04	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
CC	GO:0000151	ubiquitin ligase complex	IEA	Interproscan
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004842	ubiquitin-protein transferase activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006508	proteolysis	None	Extended
BP	GO:0006511	ubiquitin-dependent protein catabolic process	IEA	Interproscan
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009056	catabolic process	None	Extended
BP	GO:0009057	macromolecule catabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016567	protein ubiquitination	IEA	Interproscan
MF	GO:0016740	transferase activity	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
MF	GO:0019787	ubiquitin-like protein transferase activity	None	Extended
BP	GO:0019941	modification-dependent protein catabolic process	None	Extended
BP	GO:0032446	protein modification by small protein conjugation	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
MF	GO:0034450	ubiquitin-ubiquitin ligase activity	IEA	Interproscan
BP	GO:0036211	protein modification process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0043632	modification-dependent macromolecule catabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044248	cellular catabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044265	cellular macromolecule catabolic process	None	Extended
BP	GO:0051603	proteolysis involved in protein catabolic process	None	Extended
MF	GO:0061630	ubiquitin protein ligase activity	None	Extended
MF	GO:0061659	ubiquitin-like protein ligase activity	None	Extended
BP	GO:0070647	protein modification by small protein conjugation or removal	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0140096	catalytic activity, acting on a protein	None	Extended
CC	GO:0140535	intracellular protein-containing complex	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901575	organic substance catabolic process	None	Extended
CC	GO:1902494	catalytic complex	None	Extended
CC	GO:1990234	transferase complex	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003676	nucleic acid binding	IEP	HCCA
MF	GO:0003677	DNA binding	IEP	HCCA
MF	GO:0003723	RNA binding	IEP	HCCA
MF	GO:0003899	DNA-directed 5'-3' RNA polymerase activity	IEP	HCCA
MF	GO:0005488	binding	IEP	HCCA
MF	GO:0005515	protein binding	IEP	HCCA
MF	GO:0005524	ATP binding	IEP	HCCA
BP	GO:0006325	chromatin organization	IEP	HCCA
BP	GO:0006338	chromatin remodeling	IEP	HCCA
BP	GO:0006351	DNA-templated transcription	IEP	HCCA
MF	GO:0008237	metallopeptidase activity	IEP	HCCA
MF	GO:0016779	nucleotidyltransferase activity	IEP	HCCA
MF	GO:0016787	hydrolase activity	IEP	HCCA
MF	GO:0030554	adenyl nucleotide binding	IEP	HCCA
MF	GO:0032559	adenyl ribonucleotide binding	IEP	HCCA
BP	GO:0032774	RNA biosynthetic process	IEP	HCCA
MF	GO:0034062	5'-3' RNA polymerase activity	IEP	HCCA
MF	GO:0035639	purine ribonucleoside triphosphate binding	IEP	HCCA
MF	GO:0044183	protein folding chaperone	IEP	HCCA
MF	GO:0097159	organic cyclic compound binding	IEP	HCCA
BP	GO:0097659	nucleic acid-templated transcription	IEP	HCCA
MF	GO:0097747	RNA polymerase activity	IEP	HCCA
MF	GO:0140662	ATP-dependent protein folding chaperone	IEP	HCCA
MF	GO:1901363	heterocyclic compound binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR003613	Ubox_domain	950	1019
IPR019474	Ub_conjug_fac_E4_core	258	933

External Links

No external refs found!

Ala_g15646

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation