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  5. Ala_g14659

Ala_g14659


Description : psbJ/psbN-translation activator *(LPE1) & original description: none


Gene families : OG0007915 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0007915_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ala_g14659

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00049p00149530 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At3g46610... 0.02 OrthoFinder output from all 47 species
Als_g17281 No alias psbJ/psbN-translation activator *(LPE1) & original... 0.03 OrthoFinder output from all 47 species
Aspi01Gene45062.t1 Aspi01Gene45062 psbJ/psbN-translation activator *(LPE1) & original... 0.05 OrthoFinder output from all 47 species
GSVIVT01003980001 No alias Pentatricopeptide repeat-containing protein At3g46610... 0.05 OrthoFinder output from all 47 species
LOC_Os12g18640.1 LOC_Os12g18640 psbJ/psbN-translation activator (LPE1) 0.02 OrthoFinder output from all 47 species
Sam_g39178 No alias psbJ/psbN-translation activator *(LPE1) & original... 0.03 OrthoFinder output from all 47 species
Solyc02g093620.2.1 Solyc02g093620 psbJ/psbN-translation activator (LPE1) 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
MF GO:0008194 UDP-glycosyltransferase activity IEP HCCA
MF GO:0008236 serine-type peptidase activity IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0016757 glycosyltransferase activity IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016879 ligase activity, forming carbon-nitrogen bonds IEP HCCA
MF GO:0016884 carbon-nitrogen ligase activity, with glutamine as amido-N-donor IEP HCCA
MF GO:0017171 serine hydrolase activity IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
MF GO:0050660 flavin adenine dinucleotide binding IEP HCCA
MF GO:0071949 FAD binding IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 191 246
IPR002885 Pentatricopeptide_repeat 422 480
IPR002885 Pentatricopeptide_repeat 356 399
IPR033443 PPR_long 486 613
No external refs found!