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  5. Ala_g12954

Ala_g12954


Description : component *(DDW) of ISWI chromatin remodeling complex & original description: none


Gene families : OG0002374 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002374_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ala_g12954

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00021319.62 No alias No description available 0.01 OrthoFinder output from all 47 species
Dcu_g46706 No alias component *(DDW) of ISWI chromatin remodeling complex &... 0.04 OrthoFinder output from all 47 species
Len_g09069 No alias component *(DDW) of ISWI chromatin remodeling complex &... 0.03 OrthoFinder output from all 47 species
Smo107792 No alias No description available 0.02 OrthoFinder output from all 47 species
Zm00001e022717_P004 Zm00001e022717 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004175 endopeptidase activity IEP HCCA
MF GO:0004222 metalloendopeptidase activity IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006508 proteolysis IEP HCCA
MF GO:0008233 peptidase activity IEP HCCA
MF GO:0008237 metallopeptidase activity IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
CC GO:0030684 preribosome IEP HCCA
CC GO:0032040 small-subunit processome IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR013136 WSTF_Acf1_Cbp146 24 120
IPR028942 WHIM1_dom 472 508
IPR018501 DDT_dom 371 428
IPR028941 WHIM2_dom 681 747
No external refs found!