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  5. Ala_g12484

Ala_g12484


Description : not classified & original description: none


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ala_g12484

Target Alias Description ECC score Gene Family Method Actions
AT4G19191 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 OrthoFinder output from all 47 species
Adi_g023027 OTP86 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g034749 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g044582 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g054918 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g099295 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g112689 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aev_g46724 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g11401 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Ala_g20488 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g04279 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g06261 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g15385 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g19136 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g20449 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g23735 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g26632 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g27203 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g30309 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g55221 VAC1, ECB2, ATECB2 ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g09923 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g27610 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g27895 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g28240 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g36880 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g37980 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g16849 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene07235.t1 REME1, Aspi01Gene07235 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene11765.t1 EMB2261, Aspi01Gene11765 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene40416.t1 CRR22, Aspi01Gene40416 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene66051.t1 OTP84, Aspi01Gene66051 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0068.g036354 CRR22 not classified & original description: CDS=140-2386 0.03 OrthoFinder output from all 47 species
Azfi_s1107.g097662 No alias not classified & original description: CDS=1-2811 0.03 OrthoFinder output from all 47 species
Cba_g02644 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g05960 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g05966 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g06299 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g06575 VAC1, ECB2, ATECB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g07323 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g07412 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g07730 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g11729 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g20824 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g20853 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g20886 OTP84 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g26042 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g29457 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Cba_g31307 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g34428 CRR2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g34536 VAC1, ECB2, ATECB2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g35174 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g36311 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g45942 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g67468 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g67841 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ceric.04G059000.1 Ceric.04G059000 not classified & original description: pacid=50632212... 0.03 OrthoFinder output from all 47 species
Ceric.06G003100.1 Ceric.06G003100 not classified & original description: pacid=50620504... 0.05 OrthoFinder output from all 47 species
Ceric.06G014300.1 Ceric.06G014300 not classified & original description: pacid=50620883... 0.04 OrthoFinder output from all 47 species
Ceric.15G066400.1 Ceric.15G066400 not classified & original description: pacid=50640755... 0.03 OrthoFinder output from all 47 species
Ceric.16G044900.1 Ceric.16G044900 not classified & original description: pacid=50590190... 0.04 OrthoFinder output from all 47 species
Dac_g39652 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g03759 OSB3 ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g06464 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g07728 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g47933 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g50137 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g02370 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g04444 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g04948 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g05887 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g15908 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g18837 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g26478 OTP86 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g30250 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g42894 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g13211 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g14557 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01000034001 MEF19 Putative pentatricopeptide repeat-containing protein... 0.03 OrthoFinder output from all 47 species
LOC_Os01g01115.1 LOC_Os01g01115 Putative pentatricopeptide repeat-containing protein... 0.04 OrthoFinder output from all 47 species
LOC_Os01g72049.1 PTAC9, OSB2,... ssDNA-binding protein (OSB). TAC9 cofactor of... 0.03 OrthoFinder output from all 47 species
LOC_Os03g32620.1 LOC_Os03g32620 Putative pentatricopeptide repeat-containing protein... 0.03 OrthoFinder output from all 47 species
LOC_Os05g38190.2 LOC_Os05g38190 Pentatricopeptide repeat-containing protein At2g27610... 0.02 OrthoFinder output from all 47 species
Len_g54971 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g19657 CRR2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_10429540g0020 LOI1, MEF11 Pentatricopeptide repeat-containing protein At4g14850... 0.05 OrthoFinder output from all 47 species
MA_117650g0010 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.04 OrthoFinder output from all 47 species
MA_271639g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.04 OrthoFinder output from all 47 species
MA_683665g0010 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.05 OrthoFinder output from all 47 species
MA_86894g0010 CRR22 Pentatricopeptide repeat-containing protein At3g12770... 0.03 OrthoFinder output from all 47 species
MA_8868720g0010 No alias Pentatricopeptide repeat-containing protein At4g33170... 0.03 OrthoFinder output from all 47 species
MA_956160g0010 No alias Pentatricopeptide repeat-containing protein At3g02330,... 0.04 OrthoFinder output from all 47 species
Msp_g14041 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Nbi_g09695 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Nbi_g19558 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Nbi_g22746 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g26245 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g27830 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ore_g06871 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g41725 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g03106 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g57993 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g63511 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g07950 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g13334 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g53029 OTP86 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g57496 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0264.g026932 VAC1, ECB2, ATECB2 not classified & original description: CDS=1-2163 0.04 OrthoFinder output from all 47 species
Sam_g09699 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g24503 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g33616 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g38738 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g50801 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Smo10002 No alias Pentatricopeptide repeat-containing protein At4g39530... 0.02 OrthoFinder output from all 47 species
Solyc06g062610.2.1 Solyc06g062610 Putative pentatricopeptide repeat-containing protein... 0.06 OrthoFinder output from all 47 species
Spa_g14281 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g15290 VAC1, ECB2, ATECB2 ssDNA-binding protein *(OSB) & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g23159 No alias ssDNA-binding protein *(OSB) & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g25990 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g04733 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g06093 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g06117 OTP86 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g06449 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g14912 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g17887 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g29210 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP HCCA
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP HCCA
BP GO:0000398 mRNA splicing, via spliceosome IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0008380 RNA splicing IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
MF GO:0051287 NAD binding IEP HCCA
MF GO:0070403 NAD+ binding IEP HCCA
InterPro domains Description Start Stop
IPR046849 Eplus_motif 938 965
IPR002885 Pentatricopeptide_repeat 148 194
IPR002885 Pentatricopeptide_repeat 653 700
IPR002885 Pentatricopeptide_repeat 451 498
IPR002885 Pentatricopeptide_repeat 753 801
IPR002885 Pentatricopeptide_repeat 552 600
IPR002885 Pentatricopeptide_repeat 350 396
IPR046848 E_motif 871 932
IPR032867 DYW_dom 969 1061
IPR002885 Pentatricopeptide_repeat 525 548
IPR002885 Pentatricopeptide_repeat 251 280
IPR002885 Pentatricopeptide_repeat 831 849
No external refs found!