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  5. Ala_g12212

Ala_g12212 (EMB2271)


Aliases : EMB2271

Description : SSU processome assembly factor *(RRP9/YAO1) & original description: none


Gene families : OG0006246 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006246_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ala_g12212

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00155p00078230 EMB2271,... Protein biosynthesis.cytosolic ribosome.small subunit... 0.08 OrthoFinder output from all 47 species
AT4G05410 YAO Transducin/WD40 repeat-like superfamily protein 0.03 OrthoFinder output from all 47 species
Aop_g07802 EMB2271 SSU processome assembly factor *(RRP9/YAO1) & original... 0.03 OrthoFinder output from all 47 species
Azfi_s0283.g063046 YAO SSU processome assembly factor *(RRP9/YAO1) & original... 0.05 OrthoFinder output from all 47 species
Ceric.23G029700.1 EMB2271, Ceric.23G029700 SSU processome assembly factor *(RRP9/YAO1) & original... 0.06 OrthoFinder output from all 47 species
GSVIVT01021618001 EMB2271 Protein biosynthesis.cytosolic ribosome.small subunit... 0.03 OrthoFinder output from all 47 species
Len_g28722 EMB2271 SSU processome assembly factor *(RRP9/YAO1) & original... 0.05 OrthoFinder output from all 47 species
MA_10426194g0010 EMB2271 SSU processome assembly factor (RRP9/YAO1) 0.03 OrthoFinder output from all 47 species
Mp8g03800.1 EMB2271 SSU processome assembly factor (RRP9/YAO1) 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0028.g009870 EMB2271 SSU processome assembly factor *(RRP9/YAO1) & original... 0.03 OrthoFinder output from all 47 species
Solyc02g069770.3.1 EMB2271, Solyc02g069770 SSU processome assembly factor (RRP9/YAO1) 0.03 OrthoFinder output from all 47 species
Spa_g18346 EMB2271 SSU processome assembly factor *(RRP9/YAO1) & original... 0.06 OrthoFinder output from all 47 species
Tin_g17456 EMB2271 SSU processome assembly factor *(RRP9/YAO1) & original... 0.03 OrthoFinder output from all 47 species
Zm00001e012407_P002 EMB2271, Zm00001e012407 SSU processome assembly factor (RRP9/YAO1) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0006457 protein folding IEP HCCA
MF GO:0016887 ATP hydrolysis activity IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
MF GO:0044183 protein folding chaperone IEP HCCA
MF GO:0051082 unfolded protein binding IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
MF GO:0140662 ATP-dependent protein folding chaperone IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR001680 WD40_repeat 348 383
IPR001680 WD40_repeat 311 343
IPR001680 WD40_repeat 237 260
IPR001680 WD40_repeat 265 302
No external refs found!