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  5. Ala_g10871

Ala_g10871 (HVT1, ATVT-1)


Aliases : HVT1, ATVT-1

Description : not classified & original description: none


Gene families : OG0005875 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005875_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ala_g10871
Cluster HCCA: Cluster_92

Target Alias Description ECC score Gene Family Method Actions
AT1G06670 NIH nuclear DEIH-boxhelicase 0.04 OrthoFinder output from all 47 species
AT2G30800 HVT1, ATVT-1 helicase in vascular tissue and tapetum 0.03 OrthoFinder output from all 47 species
Adi_g089369 HVT1, ATVT-1 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Als_g04487 HVT1, ATVT-1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g16503 HVT1, ATVT-1 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ceric.16G053600.1 HVT1, ATVT-1,... not classified & original description: pacid=50590253... 0.03 OrthoFinder output from all 47 species
Dac_g12090 HVT1, ATVT-1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01020822001 HVT1, ATVT-1 DExH-box ATP-dependent RNA helicase DExH6 OS=Arabidopsis thaliana 0.06 OrthoFinder output from all 47 species
Gb_13707 HVT1, ATVT-1 DExH-box ATP-dependent RNA helicase DExH6 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
LOC_Os01g56190.1 HVT1, ATVT-1,... DExH-box ATP-dependent RNA helicase DExH6 OS=Arabidopsis... 0.05 OrthoFinder output from all 47 species
Lfl_g02414 HVT1, ATVT-1 not classified & original description: none 0.07 OrthoFinder output from all 47 species
Ore_g26937 HVT1, ATVT-1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g44296 HVT1, ATVT-1 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Pnu_g18268 HVT1, ATVT-1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Smo50132 HVT1, ATVT-1 DExH-box ATP-dependent RNA helicase DExH6 OS=Arabidopsis thaliana 0.07 OrthoFinder output from all 47 species
Solyc07g044930.3.1 HVT1, ATVT-1,... DExH-box ATP-dependent RNA helicase DExH6 OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species
Spa_g10294 HVT1, ATVT-1 not classified & original description: none 0.06 OrthoFinder output from all 47 species
Tin_g19921 HVT1, ATVT-1 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Zm00001e028983_P004 HVT1, ATVT-1,... DExH-box ATP-dependent RNA helicase DExH6 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003712 transcription coregulator activity IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
BP GO:0006357 regulation of transcription by RNA polymerase II IEP HCCA
CC GO:0016592 mediator complex IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
InterPro domains Description Start Stop
IPR011709 DEAD-box_helicase_OB_fold 969 1056
IPR007502 Helicase-assoc_dom 809 907
IPR001374 R3H_dom 95 150
IPR001650 Helicase_C 624 744
IPR011545 DEAD/DEAH_box_helicase_dom 258 413
No external refs found!