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  5. Ala_g08567

Ala_g08567 (ARF6)


Aliases : ARF6

Description : ARF-type transcription factor & original description: none


Gene families : OG0000088 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000088_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ala_g08567
Cluster HCCA: Cluster_104

Target Alias Description ECC score Gene Family Method Actions
Azfi_s0065.g035933 ARF6 not classified & original description: CDS=1-678 0.03 OrthoFinder output from all 47 species
Ehy_g07024 HSS, ARF1-BP, ARF2, ORE14 ARF-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
GSVIVT01015035001 ARF19, IAA22, ARF11 RNA biosynthesis.transcriptional activation.B3... 0.03 OrthoFinder output from all 47 species
Len_g15328 ARF6 ARF-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g12994 HSS, ARF1-BP, ARF2, ORE14 ARF-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0004.g002378 ARF1 ARF-type transcription factor & original description:... 0.03 OrthoFinder output from all 47 species
Solyc02g077560.3.1 ARF3, ETT, Solyc02g077560 transcription factor (ARF) 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000160 phosphorelay signal transduction system IEP HCCA
MF GO:0005085 guanyl-nucleotide exchange factor activity IEP HCCA
MF GO:0030234 enzyme regulator activity IEP HCCA
MF GO:0030695 GTPase regulator activity IEP HCCA
BP GO:0035556 intracellular signal transduction IEP HCCA
MF GO:0060589 nucleoside-triphosphatase regulator activity IEP HCCA
MF GO:0098772 molecular function regulator activity IEP HCCA
MF GO:0140677 molecular function activator activity IEP HCCA
MF GO:0140678 molecular function inhibitor activity IEP HCCA
InterPro domains Description Start Stop
IPR033389 AUX/IAA_dom 1073 1155
IPR010525 ARF_dom 274 357
IPR003340 B3_DNA-bd 148 249
No external refs found!