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  5. Ala_g08386

Ala_g08386 (Tudor1, AtTudor1, TSN1)


Aliases : Tudor1, AtTudor1, TSN1

Description : mRNA endoribonuclease *(TSN) & original description: none


Gene families : OG0004117 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004117_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ala_g08386

Target Alias Description ECC score Gene Family Method Actions
AT5G07350 Tudor1, AtTudor1, TSN1 TUDOR-SN protein 1 0.03 OrthoFinder output from all 47 species
AT5G61780 TSN2, Tudor2, AtTudor2 TUDOR-SN protein 2 0.02 OrthoFinder output from all 47 species
Adi_g012843 Tudor1, AtTudor1, TSN1 mRNA endoribonuclease *(TSN) & original description: none 0.04 OrthoFinder output from all 47 species
Als_g01168 Tudor1, AtTudor1, TSN1 mRNA endoribonuclease *(TSN) & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g18577 Tudor1, AtTudor1, TSN1 mRNA endoribonuclease *(TSN) & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g10898 Tudor1, AtTudor1, TSN1 mRNA endoribonuclease *(TSN) & original description: none 0.05 OrthoFinder output from all 47 species
Cba_g22914 Tudor1, AtTudor1, TSN1 mRNA endoribonuclease *(TSN) & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.26G032900.1 Tudor1,... mRNA endoribonuclease *(TSN) & original description:... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00021357.70 Tudor1, AtTudor1, TSN1 Ribonuclease TUDOR 1 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Gb_32409 Tudor1, AtTudor1, TSN1 ribonuclease (TSN) 0.03 OrthoFinder output from all 47 species
Len_g17365 Tudor1, AtTudor1, TSN1 mRNA endoribonuclease *(TSN) & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g20110 TSN2, Tudor2, AtTudor2 mRNA endoribonuclease *(TSN) & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g32209 Tudor1, AtTudor1, TSN1 mRNA endoribonuclease *(TSN) & original description: none 0.03 OrthoFinder output from all 47 species
Solyc03g118010.4.1 Tudor1,... ribonuclease (TSN) 0.03 OrthoFinder output from all 47 species
Solyc03g118020.3.1 Tudor1,... ribonuclease (TSN) 0.04 OrthoFinder output from all 47 species
Tin_g04176 Tudor1, AtTudor1, TSN1 mRNA endoribonuclease *(TSN) & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e022564_P001 Tudor1,... ribonuclease (TSN) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0003849 3-deoxy-7-phosphoheptulonate synthase activity IEP HCCA
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
MF GO:0003905 alkylbase DNA N-glycosylase activity IEP HCCA
MF GO:0004486 methylenetetrahydrofolate dehydrogenase [NAD(P)+] activity IEP HCCA
MF GO:0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity IEP HCCA
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0005488 binding IEP HCCA
CC GO:0005634 nucleus IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006284 base-excision repair IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
BP GO:0008150 biological_process IEP HCCA
MF GO:0008725 DNA-3-methyladenine glycosylase activity IEP HCCA
BP GO:0009072 aromatic amino acid metabolic process IEP HCCA
BP GO:0009073 aromatic amino acid family biosynthetic process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0016053 organic acid biosynthetic process IEP HCCA
BP GO:0016192 vesicle-mediated transport IEP HCCA
MF GO:0016645 oxidoreductase activity, acting on the CH-NH group of donors IEP HCCA
MF GO:0016646 oxidoreductase activity, acting on the CH-NH group of donors, NAD or NADP as acceptor IEP HCCA
MF GO:0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
MF GO:0016799 hydrolase activity, hydrolyzing N-glycosyl compounds IEP HCCA
MF GO:0019104 DNA N-glycosylase activity IEP HCCA
BP GO:0019438 aromatic compound biosynthetic process IEP HCCA
BP GO:0022613 ribonucleoprotein complex biogenesis IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
BP GO:0042254 ribosome biogenesis IEP HCCA
MF GO:0043733 DNA-3-methylbase glycosylase activity IEP HCCA
BP GO:0044085 cellular component biogenesis IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
BP GO:1901362 organic cyclic compound biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR016071 Staphylococal_nuclease_OB-fold 35 143
IPR016071 Staphylococal_nuclease_OB-fold 267 360
IPR016071 Staphylococal_nuclease_OB-fold 620 718
IPR002999 Tudor 740 861
No external refs found!