Lfl_g00829 (emb2394)

Aliases : emb2394

Description : component *(uL6c) of large plastid ribosomal-subunit proteome & original description: none

Gene families : OG0003589 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003589_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Lfl_g00829

Target	Alias	Description	ECC score	Gene Family Method
AT1G05190	emb2394	Ribosomal protein L6 family	0.06	OrthoFinder output from all 47 species
Adi_g085705	emb2394	component *(uL6c) of large plastid ribosomal-subunit...	0.08	OrthoFinder output from all 47 species
Aev_g41502	emb2394	component *(uL6c) of large plastid ribosomal-subunit...	0.05	OrthoFinder output from all 47 species
Ala_g09001	emb2394	component *(uL6c) of large plastid ribosomal-subunit...	0.1	OrthoFinder output from all 47 species
Als_g21971	emb2394	component *(uL6c) of large plastid ribosomal-subunit...	0.07	OrthoFinder output from all 47 species
Aob_g07004	emb2394	component *(uL6c) of large plastid ribosomal-subunit...	0.03	OrthoFinder output from all 47 species
Azfi_s0387.g067570	emb2394	component *(uL6c) of large plastid ribosomal-subunit...	0.05	OrthoFinder output from all 47 species
Ceric.25G034500.1	emb2394, Ceric.25G034500	component *(uL6c) of large plastid ribosomal-subunit...	0.07	OrthoFinder output from all 47 species
Cre09.g415950	emb2394	Protein biosynthesis.organelle translation...	0.03	OrthoFinder output from all 47 species
Dac_g02024	emb2394	component *(uL6c) of large plastid ribosomal-subunit...	0.04	OrthoFinder output from all 47 species
Dcu_g12981	emb2394	component *(uL6c) of large plastid ribosomal-subunit...	0.09	OrthoFinder output from all 47 species
Ehy_g05438	emb2394	component *(uL6c) of large plastid ribosomal-subunit...	0.05	OrthoFinder output from all 47 species
GSVIVT01030599001	emb2394	Protein biosynthesis.organelle translation...	0.05	OrthoFinder output from all 47 species
Gb_27916	emb2394	component psRPL6 of large ribosomal subunit proteome	0.04	OrthoFinder output from all 47 species
LOC_Os03g24020.1	emb2394, LOC_Os03g24020	component psRPL6 of large ribosomal subunit proteome	0.04	OrthoFinder output from all 47 species
LOC_Os03g54040.1	emb2394, LOC_Os03g54040	component psRPL6 of large ribosomal subunit proteome	0.03	OrthoFinder output from all 47 species
Len_g08412	emb2394	component *(uL6c) of large plastid ribosomal-subunit...	0.05	OrthoFinder output from all 47 species
MA_54628g0010	emb2394	component psRPL6 of large ribosomal subunit proteome	0.04	OrthoFinder output from all 47 species
Mp1g03630.1	emb2394	component psRPL6 of large ribosomal subunit proteome	0.06	OrthoFinder output from all 47 species
Msp_g08305	emb2394	component *(uL6c) of large plastid ribosomal-subunit...	0.03	OrthoFinder output from all 47 species
Nbi_g02779	emb2394	component *(uL6c) of large plastid ribosomal-subunit...	0.05	OrthoFinder output from all 47 species
Ore_g05671	emb2394	component *(uL6c) of large plastid ribosomal-subunit...	0.09	OrthoFinder output from all 47 species
Ore_g34962	emb2394	component *(uL6c) of large plastid ribosomal-subunit...	0.02	OrthoFinder output from all 47 species
Pir_g14367	emb2394	component *(uL6c) of large plastid ribosomal-subunit...	0.03	OrthoFinder output from all 47 species
Pir_g55752	emb2394	component *(uL6c) of large plastid ribosomal-subunit...	0.02	OrthoFinder output from all 47 species
Pnu_g10916	emb2394	component *(uL6c) of large plastid ribosomal-subunit...	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0038.g011918	emb2394	component *(uL6c) of large plastid ribosomal-subunit...	0.05	OrthoFinder output from all 47 species
Sam_g15102	No alias	component *(uL6c) of large plastid ribosomal-subunit...	0.09	OrthoFinder output from all 47 species
Solyc12g100160.3.1	emb2394, Solyc12g100160	component psRPL6 of large ribosomal subunit proteome	0.05	OrthoFinder output from all 47 species
Spa_g11042	emb2394	component *(uL6c) of large plastid ribosomal-subunit...	0.05	OrthoFinder output from all 47 species
Zm00001e001699_P002	emb2394, Zm00001e001699	component psRPL6 of large ribosomal subunit proteome	0.05	OrthoFinder output from all 47 species
Zm00001e038182_P002	emb2394, Zm00001e038182	component psRPL6 of large ribosomal subunit proteome	0.06	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
MF	GO:0019843	rRNA binding	IEA	Interproscan
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000049	tRNA binding	IEP	HCCA
MF	GO:0004089	carbonate dehydratase activity	IEP	HCCA
BP	GO:0006720	isoprenoid metabolic process	IEP	HCCA
BP	GO:0006721	terpenoid metabolic process	IEP	HCCA
BP	GO:0008299	isoprenoid biosynthetic process	IEP	HCCA
MF	GO:0008685	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity	IEP	HCCA
MF	GO:0008942	nitrite reductase [NAD(P)H] activity	IEP	HCCA
CC	GO:0009507	chloroplast	IEP	HCCA
CC	GO:0009521	photosystem	IEP	HCCA
CC	GO:0009523	photosystem II	IEP	HCCA
CC	GO:0009536	plastid	IEP	HCCA
CC	GO:0009654	photosystem II oxygen evolving complex	IEP	HCCA
BP	GO:0015979	photosynthesis	IEP	HCCA
BP	GO:0016114	terpenoid biosynthetic process	IEP	HCCA
MF	GO:0016491	oxidoreductase activity	IEP	HCCA
MF	GO:0016614	oxidoreductase activity, acting on CH-OH group of donors	IEP	HCCA
MF	GO:0016616	oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	IEP	HCCA
MF	GO:0016661	oxidoreductase activity, acting on other nitrogenous compounds as donors	IEP	HCCA
MF	GO:0016829	lyase activity	IEP	HCCA
MF	GO:0016835	carbon-oxygen lyase activity	IEP	HCCA
MF	GO:0016836	hydro-lyase activity	IEP	HCCA
MF	GO:0016849	phosphorus-oxygen lyase activity	IEP	HCCA
CC	GO:0019898	extrinsic component of membrane	IEP	HCCA
CC	GO:0032991	protein-containing complex	IEP	HCCA
MF	GO:0046857	oxidoreductase activity, acting on other nitrogenous compounds as donors, with NAD or NADP as acceptor	IEP	HCCA
MF	GO:0051287	NAD binding	IEP	HCCA
MF	GO:0051536	iron-sulfur cluster binding	IEP	HCCA
MF	GO:0051537	2 iron, 2 sulfur cluster binding	IEP	HCCA
MF	GO:0051540	metal cluster binding	IEP	HCCA
BP	GO:0065003	protein-containing complex assembly	IEP	HCCA
CC	GO:0098796	membrane protein complex	IEP	HCCA
MF	GO:0098809	nitrite reductase activity	IEP	HCCA
BP	GO:0110102	ribulose bisphosphate carboxylase complex assembly	IEP	HCCA
CC	GO:1990204	oxidoreductase complex	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR020040	Ribosomal_L6_a/b-dom	138	212
IPR020040	Ribosomal_L6_a/b-dom	58	130

External Links

No external refs found!

Lfl_g00829 (emb2394)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation