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  5. Ala_g07642

Ala_g07642


Description : not classified & original description: none


Gene families : OG0004787 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004787_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ala_g07642
Cluster HCCA: Cluster_145

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00078p00166420 evm_27.TU.AmTr_v1... Protein degradation.peptidase families.metallopeptidase... 0.04 OrthoFinder output from all 47 species
AT4G39420 No alias unknown protein; Has 46 Blast hits to 40 proteins in 10... 0.15 OrthoFinder output from all 47 species
Adi_g055851 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g14940 No alias not classified & original description: none 0.09 OrthoFinder output from all 47 species
Als_g14010 No alias not classified & original description: none 0.09 OrthoFinder output from all 47 species
Aob_g29246 No alias not classified & original description: none 0.08 OrthoFinder output from all 47 species
Aspi01Gene69937.t1 Aspi01Gene69937 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Azfi_s0032.g024813 No alias not classified & original description: CDS=1-9261 0.06 OrthoFinder output from all 47 species
Cba_g15371 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ceric.03G068400.1 Ceric.03G068400 not classified & original description: pacid=50571766... 0.1 OrthoFinder output from all 47 species
Dac_g31801 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g20414 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Ehy_g25392 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01022255001 No alias No description available 0.14 OrthoFinder output from all 47 species
GSVIVT01022256001 No alias No description available 0.12 OrthoFinder output from all 47 species
LOC_Os01g08750.2 LOC_Os01g08750 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Lfl_g02480 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
MA_10429811g0020 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
MA_280504g0010 No alias no hits & (original description: none) 0.07 OrthoFinder output from all 47 species
MA_646g0010 No alias no hits & (original description: none) 0.07 OrthoFinder output from all 47 species
MA_693456g0010 No alias no hits & (original description: none) 0.07 OrthoFinder output from all 47 species
Mp4g01220.1 No alias no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
Ore_g29875 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g19111 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g04008 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g50521 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Solyc04g051570.4.1 Solyc04g051570 no hits & (original description: none) 0.06 OrthoFinder output from all 47 species
Zm00001e006162_P003 Zm00001e006162 no hits & (original description: none) 0.06 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000160 phosphorelay signal transduction system IEP HCCA
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003689 DNA clamp loader activity IEP HCCA
MF GO:0004842 ubiquitin-protein transferase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
CC GO:0005663 DNA replication factor C complex IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006260 DNA replication IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0019787 ubiquitin-like protein transferase activity IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
BP GO:0035556 intracellular signal transduction IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0140096 catalytic activity, acting on a protein IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR028107 Spatacsin_C_dom 2739 3029
No external refs found!