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  5. Ala_g07328

Ala_g07328


Description : not classified & original description: none


Gene families : OG0016747 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0016747_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ala_g07328

Target Alias Description ECC score Gene Family Method Actions
Aop_g11918 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ceric.1Z028600.1 Ceric.1Z028600 not classified & original description: pacid=50582133... 0.04 OrthoFinder output from all 47 species
Pir_g03425 VAC1, ECB2, ATECB2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g15384 VAC1, ECB2, ATECB2 not classified & original description: none 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0002097 tRNA wobble base modification IEP HCCA
BP GO:0002098 tRNA wobble uridine modification IEP HCCA
MF GO:0003924 GTPase activity IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006400 tRNA modification IEP HCCA
BP GO:0008033 tRNA processing IEP HCCA
MF GO:0008168 methyltransferase activity IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
MF GO:0016741 transferase activity, transferring one-carbon groups IEP HCCA
CC GO:0033588 elongator holoenzyme complex IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
CC GO:0140535 intracellular protein-containing complex IEP HCCA
CC GO:1902494 catalytic complex IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 684 708
IPR002885 Pentatricopeptide_repeat 652 676
IPR002885 Pentatricopeptide_repeat 147 172
IPR002885 Pentatricopeptide_repeat 248 273
IPR002885 Pentatricopeptide_repeat 173 218
IPR002885 Pentatricopeptide_repeat 577 625
IPR002885 Pentatricopeptide_repeat 274 320
IPR002885 Pentatricopeptide_repeat 375 422
No external refs found!