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  5. Ala_g07260

Ala_g07260


Description : plastidial splicing factor *(PDM4) & original description: none


Gene families : OG0007469 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0007469_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ala_g07260
Cluster HCCA: Cluster_55

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00048p00132600 EMB976,... Pentatricopeptide repeat-containing protein At5g27270... 0.03 OrthoFinder output from all 47 species
Adi_g059643 EMB976 plastidial splicing factor *(PDM4) & original description: none 0.04 OrthoFinder output from all 47 species
Als_g13289 EMB976 plastidial splicing factor *(PDM4) & original description: none 0.07 OrthoFinder output from all 47 species
Aop_g68889 EMB976 plastidial splicing factor *(PDM4) & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g01274 EMB976 plastidial splicing factor *(PDM4) & original description: none 0.04 OrthoFinder output from all 47 species
Gb_15749 EMB976 Pentatricopeptide repeat-containing protein At5g27270... 0.04 OrthoFinder output from all 47 species
Lfl_g10450 EMB976 plastidial splicing factor *(PDM4) & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g51412 No alias plastidial splicing factor *(PDM4) & original description: none 0.03 OrthoFinder output from all 47 species
Smo110655 EMB976 Pentatricopeptide repeat-containing protein At5g27270... 0.04 OrthoFinder output from all 47 species
Solyc03g097000.3.1 EMB976, Solyc03g097000 Pentatricopeptide repeat-containing protein At5g27270... 0.02 OrthoFinder output from all 47 species
Tin_g01225 EMB976 plastidial splicing factor *(PDM4) & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0005488 binding IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
MF GO:0016747 acyltransferase activity, transferring groups other than amino-acyl groups IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043169 cation binding IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 450 469
IPR002885 Pentatricopeptide_repeat 196 224
IPR002885 Pentatricopeptide_repeat 233 259
IPR002885 Pentatricopeptide_repeat 581 602
IPR002885 Pentatricopeptide_repeat 404 432
IPR002885 Pentatricopeptide_repeat 475 504
IPR002885 Pentatricopeptide_repeat 711 738
IPR002885 Pentatricopeptide_repeat 545 573
IPR002885 Pentatricopeptide_repeat 263 308
IPR002885 Pentatricopeptide_repeat 331 376
No external refs found!