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  5. Ala_g05939

Ala_g05939


Description : RING-H2-class CTL-subclass E3 ubiquitin ligase & original description: none


Gene families : OG0000374 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000374_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ala_g05939

Target Alias Description ECC score Gene Family Method Actions
AT4G00070 No alias RING/U-box superfamily protein 0.04 OrthoFinder output from all 47 species
Als_g15672 No alias RING-H2-class CTL-subclass E3 ubiquitin ligase &... 0.05 OrthoFinder output from all 47 species
Aop_g18311 No alias RING-H2-class CTL-subclass E3 ubiquitin ligase &... 0.04 OrthoFinder output from all 47 species
Aspi01Gene08615.t1 Aspi01Gene08615 RING-H2-class CTL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Aspi01Gene44721.t1 Aspi01Gene44721 RING-H2-class CTL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Azfi_s0154.g053541 No alias RING-H2-class CTL-subclass E3 ubiquitin ligase &... 0.04 OrthoFinder output from all 47 species
Cba_g36468 No alias RING-H2-class CTL-subclass E3 ubiquitin ligase &... 0.02 OrthoFinder output from all 47 species
Dcu_g41510 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ehy_g08299 No alias RING-H2-class CTL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
LOC_Os05g48970.1 LOC_Os05g48970 Probable E3 ubiquitin-protein ligase ZFP1 OS=Oryza... 0.03 OrthoFinder output from all 47 species
Msp_g16217 No alias RING-H2-class CTL-subclass E3 ubiquitin ligase &... 0.04 OrthoFinder output from all 47 species
Solyc12g014070.2.1 Solyc12g014070 Probable E3 ubiquitin-protein ligase ZFP1 OS=Oryza... 0.04 OrthoFinder output from all 47 species
Zm00001e013672_P001 Zm00001e013672 Probable E3 ubiquitin-protein ligase HIP1 OS=Oryza... 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
BP GO:0006629 lipid metabolic process IEP HCCA
BP GO:0008150 biological_process IEP HCCA
MF GO:0008374 O-acyltransferase activity IEP HCCA
MF GO:0016462 pyrophosphatase activity IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0016746 acyltransferase activity IEP HCCA
MF GO:0016747 acyltransferase activity, transferring groups other than amino-acyl groups IEP HCCA
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP HCCA
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP HCCA
MF GO:0016887 ATP hydrolysis activity IEP HCCA
MF GO:0017111 ribonucleoside triphosphate phosphatase activity IEP HCCA
MF GO:0019842 vitamin binding IEP HCCA
MF GO:0030170 pyridoxal phosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
MF GO:0070279 vitamin B6 binding IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR001841 Znf_RING 593 635
No external refs found!