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  5. Ala_g04919

Ala_g04919 (SR30, ATSRP30, At-SR30)


Aliases : SR30, ATSRP30, At-SR30

Description : RNA splicing factor *(SR30/34) & original description: none


Gene families : OG0001059 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001059_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ala_g04919

Target Alias Description ECC score Gene Family Method Actions
Adi_g018175 At-SR34, SRP34,... RNA splicing factor *(SR30/34) & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g056476 At-SR34, SRP34,... RNA splicing factor *(SR30/34) & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g08904 SR30, ATSRP30, At-SR30 RNA splicing factor *(SR30/34) & original description: none 0.04 OrthoFinder output from all 47 species
Ceric.09G062100.1 SR30, ATSRP30,... RNA splicing factor *(SR30/34) & original description:... 0.03 OrthoFinder output from all 47 species
Ceric.11G080500.1 At-SR34a, SR34a,... RNA splicing factor *(SR30/34) & original description:... 0.03 OrthoFinder output from all 47 species
Dde_g39694 At-SR34a, SR34a, SRp34a RNA splicing factor *(SR30/34) & original description: none 0.03 OrthoFinder output from all 47 species
MA_141465g0010 SR30, ATSRP30, At-SR30 SR30/34 RNA splicing factor 0.05 OrthoFinder output from all 47 species
Sam_g19708 No alias RNA splicing factor *(SR30/34) & original description: none 0.03 OrthoFinder output from all 47 species
Solyc01g099810.3.1 SR30, ATSRP30,... SR30/34 RNA splicing factor 0.02 OrthoFinder output from all 47 species
Spa_g17256 At-SR34a, SR34a, SRp34a RNA splicing factor *(SR30/34) & original description: none 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000160 phosphorelay signal transduction system IEP HCCA
MF GO:0003700 DNA-binding transcription factor activity IEP HCCA
BP GO:0007165 signal transduction IEP HCCA
BP GO:0035556 intracellular signal transduction IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
InterPro domains Description Start Stop
IPR000504 RRM_dom 112 176
IPR000504 RRM_dom 9 75
No external refs found!