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  5. Ala_g02603

Ala_g02603


Description : regulatory protein *(PATROL1) involved in cellulose synthase trafficking & original description: none


Gene families : OG0000883 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000883_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ala_g02603

Target Alias Description ECC score Gene Family Method Actions
AT2G25800 No alias Protein of unknown function (DUF810) 0.03 OrthoFinder output from all 47 species
AT2G33420 No alias Protein of unknown function (DUF810) 0.03 OrthoFinder output from all 47 species
AT5G06970 No alias Protein of unknown function (DUF810) 0.03 OrthoFinder output from all 47 species
Aev_g02574 No alias regulatory protein *(PATROL1) involved in cellulose... 0.04 OrthoFinder output from all 47 species
Aev_g02581 No alias regulatory protein *(PATROL1) involved in cellulose... 0.03 OrthoFinder output from all 47 species
Azfi_s0099.g044165 No alias not classified & original description: CDS=394-3840 0.03 OrthoFinder output from all 47 species
Ceric.13G084700.1 Ceric.13G084700 regulatory protein *(PATROL1) involved in cellulose... 0.03 OrthoFinder output from all 47 species
Dde_g39400 No alias regulatory protein *(PATROL1) involved in cellulose... 0.03 OrthoFinder output from all 47 species
Ehy_g01671 No alias regulatory protein *(PATROL1) involved in cellulose... 0.04 OrthoFinder output from all 47 species
GSVIVT01035623001 No alias Protein unc-13 homolog OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
GSVIVT01036645001 No alias Protein unc-13 homolog OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
Gb_20494 No alias Protein unc-13 homolog OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Gb_29552 No alias regulatory protein (PATROL1) of CSC trafficking 0.04 OrthoFinder output from all 47 species
LOC_Os03g47930.1 LOC_Os03g47930 regulatory protein (PATROL1) of CSC trafficking 0.04 OrthoFinder output from all 47 species
LOC_Os08g30070.1 LOC_Os08g30070 Protein unc-13 homolog OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Len_g16187 No alias regulatory protein *(PATROL1) involved in cellulose... 0.06 OrthoFinder output from all 47 species
MA_10436219g0010 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
MA_12587g0010 No alias Protein unc-13 homolog OS=Arabidopsis thaliana... 0.06 OrthoFinder output from all 47 species
Mp4g07000.1 No alias regulatory protein (PATROL1) of CSC trafficking 0.04 OrthoFinder output from all 47 species
Nbi_g10306 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g08959 No alias regulatory protein *(PATROL1) involved in cellulose... 0.02 OrthoFinder output from all 47 species
Smo92955 No alias Protein unc-13 homolog OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
Solyc01g096540.4.1 Solyc01g096540 regulatory protein (PATROL1) of CSC trafficking 0.02 OrthoFinder output from all 47 species
Solyc08g066600.4.1 Solyc08g066600 Protein unc-13 homolog OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species
Spa_g06397 No alias regulatory protein *(PATROL1) involved in cellulose... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003779 actin binding IEP HCCA
MF GO:0005085 guanyl-nucleotide exchange factor activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
CC GO:0005783 endoplasmic reticulum IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006457 protein folding IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
BP GO:0007010 cytoskeleton organization IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0009966 regulation of signal transduction IEP HCCA
BP GO:0010646 regulation of cell communication IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
BP GO:0016192 vesicle-mediated transport IEP HCCA
BP GO:0023051 regulation of signaling IEP HCCA
CC GO:0030117 membrane coat IEP HCCA
MF GO:0030234 enzyme regulator activity IEP HCCA
BP GO:0030490 maturation of SSU-rRNA IEP HCCA
MF GO:0030515 snoRNA binding IEP HCCA
MF GO:0030695 GTPase regulator activity IEP HCCA
BP GO:0032012 regulation of ARF protein signal transduction IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0046578 regulation of Ras protein signal transduction IEP HCCA
BP GO:0048583 regulation of response to stimulus IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0051056 regulation of small GTPase mediated signal transduction IEP HCCA
MF GO:0051082 unfolded protein binding IEP HCCA
MF GO:0060589 nucleoside-triphosphatase regulator activity IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0098772 molecular function regulator activity IEP HCCA
MF GO:0140677 molecular function activator activity IEP HCCA
MF GO:0140678 molecular function inhibitor activity IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
BP GO:1902531 regulation of intracellular signal transduction IEP HCCA

No InterPro domains available for this sequence

No external refs found!