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  5. Ala_g02565

Ala_g02565 (PWP2, ATPWP2)


Aliases : PWP2, ATPWP2

Description : SSU processome assembly factor *(UTP1/PWP2) & original description: none


Gene families : OG0005463 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005463_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ala_g02565

Target Alias Description ECC score Gene Family Method Actions
AT1G15440 PWP2, ATPWP2 periodic tryptophan protein 2 0.03 OrthoFinder output from all 47 species
Adi_g022769 PWP2, ATPWP2 SSU processome assembly factor *(UTP1/PWP2) & original... 0.02 OrthoFinder output from all 47 species
Aev_g07968 PWP2, ATPWP2 SSU processome assembly factor *(UTP1/PWP2) & original... 0.04 OrthoFinder output from all 47 species
Cba_g01301 PWP2, ATPWP2 SSU processome assembly factor *(UTP1/PWP2) & original... 0.03 OrthoFinder output from all 47 species
Ceric.39G059700.1 PWP2, ATPWP2,... SSU processome assembly factor *(UTP1/PWP2) & original... 0.03 OrthoFinder output from all 47 species
Cre06.g254150 PWP2, ATPWP2 Protein biosynthesis.cytosolic ribosome.small subunit... 0.02 OrthoFinder output from all 47 species
Dcu_g01964 PWP2, ATPWP2 SSU processome assembly factor *(UTP1/PWP2) & original... 0.06 OrthoFinder output from all 47 species
GSVIVT01017243001 PWP2, ATPWP2 Protein biosynthesis.cytosolic ribosome.small subunit... 0.04 OrthoFinder output from all 47 species
Gb_23048 PWP2, ATPWP2 SSU processome assembly factor (UTP1/PWP2) 0.04 OrthoFinder output from all 47 species
LOC_Os05g44320.1 PWP2, ATPWP2,... SSU processome assembly factor (UTP1/PWP2) 0.04 OrthoFinder output from all 47 species
Mp1g17900.1 PWP2, ATPWP2 SSU processome assembly factor (UTP1/PWP2) 0.03 OrthoFinder output from all 47 species
Pp3c7_9990V3.1 PWP2, ATPWP2, Pp3c7_9990 periodic tryptophan protein 2 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0053.g014180 PWP2, ATPWP2 SSU processome assembly factor *(UTP1/PWP2) & original... 0.03 OrthoFinder output from all 47 species
Solyc03g120080.4.1 PWP2, ATPWP2,... SSU processome assembly factor (UTP1/PWP2) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0005085 guanyl-nucleotide exchange factor activity IEP HCCA
BP GO:0009966 regulation of signal transduction IEP HCCA
BP GO:0010646 regulation of cell communication IEP HCCA
BP GO:0023051 regulation of signaling IEP HCCA
MF GO:0030234 enzyme regulator activity IEP HCCA
MF GO:0030695 GTPase regulator activity IEP HCCA
BP GO:0032012 regulation of ARF protein signal transduction IEP HCCA
BP GO:0046578 regulation of Ras protein signal transduction IEP HCCA
BP GO:0048583 regulation of response to stimulus IEP HCCA
BP GO:0051056 regulation of small GTPase mediated signal transduction IEP HCCA
MF GO:0060589 nucleoside-triphosphatase regulator activity IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0098772 molecular function regulator activity IEP HCCA
MF GO:0140677 molecular function activator activity IEP HCCA
MF GO:0140678 molecular function inhibitor activity IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
BP GO:1902531 regulation of intracellular signal transduction IEP HCCA
InterPro domains Description Start Stop
IPR001680 WD40_repeat 132 167
IPR001680 WD40_repeat 401 432
IPR001680 WD40_repeat 87 119
IPR001680 WD40_repeat 571 602
IPR001680 WD40_repeat 524 560
IPR001680 WD40_repeat 438 474
IPR007148 SSU_processome_Utp12 802 907
No external refs found!