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  5. Ala_g00515

Ala_g00515


Description : component *(cS23) of small plastid ribosomal-subunit proteome & original description: none


Gene families : OG0003343 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003343_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ala_g00515

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00010p00055110 evm_27.TU.AmTr_v1... Protein biosynthesis.organelle translation... 0.07 OrthoFinder output from all 47 species
AT1G68590 No alias Ribosomal protein PSRP-3/Ycf65 0.16 OrthoFinder output from all 47 species
Adi_g086977 No alias component *(cS23) of small plastid ribosomal-subunit... 0.03 OrthoFinder output from all 47 species
Als_g28969 No alias component *(cS23) of small plastid ribosomal-subunit... 0.07 OrthoFinder output from all 47 species
Aob_g07615 No alias component *(cS23) of small plastid ribosomal-subunit... 0.06 OrthoFinder output from all 47 species
Aob_g08130 No alias component *(cS23) of small plastid ribosomal-subunit... 0.03 OrthoFinder output from all 47 species
Aop_g00272 No alias component *(cS23) of small plastid ribosomal-subunit... 0.03 OrthoFinder output from all 47 species
Azfi_s0052.g031601 No alias component *(cS23) of small plastid ribosomal-subunit... 0.06 OrthoFinder output from all 47 species
Azfi_s0405.g068388 No alias component *(cS23) of small plastid ribosomal-subunit... 0.04 OrthoFinder output from all 47 species
Cba_g32123 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.29G082200.1 Ceric.29G082200 component *(cS23) of small plastid ribosomal-subunit... 0.16 OrthoFinder output from all 47 species
Cre02.g083950 No alias Protein biosynthesis.organelle translation... 0.09 OrthoFinder output from all 47 species
Dcu_g00469 No alias component *(cS23) of small plastid ribosomal-subunit... 0.06 OrthoFinder output from all 47 species
Dcu_g05305 No alias component *(cS23) of small plastid ribosomal-subunit... 0.08 OrthoFinder output from all 47 species
Dde_g13740 No alias component *(cS23) of small plastid ribosomal-subunit... 0.03 OrthoFinder output from all 47 species
Ehy_g06384 No alias component *(cS23) of small plastid ribosomal-subunit... 0.06 OrthoFinder output from all 47 species
GSVIVT01031053001 No alias Protein biosynthesis.organelle translation... 0.08 OrthoFinder output from all 47 species
Gb_30016 No alias component psPSRP3 of small ribosomal subunit proteome 0.1 OrthoFinder output from all 47 species
LOC_Os04g38750.1 LOC_Os04g38750 component psPSRP3 of small ribosomal subunit proteome 0.1 OrthoFinder output from all 47 species
Len_g56473 No alias component *(cS23) of small plastid ribosomal-subunit... 0.03 OrthoFinder output from all 47 species
Lfl_g02667 No alias component *(cS23) of small plastid ribosomal-subunit... 0.05 OrthoFinder output from all 47 species
MA_10432955g0010 No alias component psPSRP3 of small ribosomal subunit proteome 0.1 OrthoFinder output from all 47 species
MA_19834g0010 No alias component psPSRP3 of small ribosomal subunit proteome 0.07 OrthoFinder output from all 47 species
Mp2g13520.1 No alias component psPSRP3 of small ribosomal subunit proteome 0.13 OrthoFinder output from all 47 species
Nbi_g11062 No alias component *(cS23) of small plastid ribosomal-subunit... 0.09 OrthoFinder output from all 47 species
Ore_g05910 No alias component *(cS23) of small plastid ribosomal-subunit... 0.05 OrthoFinder output from all 47 species
Ore_g26894 No alias component *(cS23) of small plastid ribosomal-subunit... 0.08 OrthoFinder output from all 47 species
Pnu_g09092 No alias component *(cS23) of small plastid ribosomal-subunit... 0.02 OrthoFinder output from all 47 species
Pp3c6_19070V3.1 Pp3c6_19070 Ribosomal protein PSRP-3/Ycf65 0.01 OrthoFinder output from all 47 species
Ppi_g21764 No alias component *(cS23) of small plastid ribosomal-subunit... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0075.g017327 No alias EC_3.4 hydrolase acting on peptide bond (peptidase) &... 0.06 OrthoFinder output from all 47 species
Solyc05g009570.3.1 Solyc05g009570 component psPSRP3 of small ribosomal subunit proteome 0.12 OrthoFinder output from all 47 species
Spa_g01460 No alias component *(cS23) of small plastid ribosomal-subunit... 0.07 OrthoFinder output from all 47 species
Tin_g12630 No alias component *(cS23) of small plastid ribosomal-subunit... 0.03 OrthoFinder output from all 47 species
Zm00001e041019_P001 Zm00001e041019 component psPSRP3 of small ribosomal subunit proteome 0.13 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003746 translation elongation factor activity IEP HCCA
BP GO:0006414 translational elongation IEP HCCA
MF GO:0008135 translation factor activity, RNA binding IEP HCCA
CC GO:0009521 photosystem IEP HCCA
CC GO:0009523 photosystem II IEP HCCA
BP GO:0010206 photosystem II repair IEP HCCA
BP GO:0010207 photosystem II assembly IEP HCCA
BP GO:0022607 cellular component assembly IEP HCCA
BP GO:0030091 protein repair IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
MF GO:0045182 translation regulator activity IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
MF GO:0090079 translation regulator activity, nucleic acid binding IEP HCCA
InterPro domains Description Start Stop
IPR006924 Ribosomal_PSRP3/Ycf65 97 143
No external refs found!