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  5. Msp_g47727

Msp_g47727


Description : type-Ia DNA topoisomerase & original description: none


Gene families : OG0003699 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003699_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Msp_g47727
Cluster HCCA: Cluster_31

Target Alias Description ECC score Gene Family Method Actions
AT4G31210 No alias DNA topoisomerase, type IA, core 0.04 OrthoFinder output from all 47 species
Adi_g021892 No alias type-Ia DNA topoisomerase & original description: none 0.02 OrthoFinder output from all 47 species
Als_g48687 No alias type-Ia DNA topoisomerase & original description: none 0.04 OrthoFinder output from all 47 species
Azfi_s0066.g036119 No alias type-Ia DNA topoisomerase & original description: CDS=286-3858 0.03 OrthoFinder output from all 47 species
Cba_g27398 No alias type-Ia DNA topoisomerase & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.22G057500.1 Ceric.22G057500 type-Ia DNA topoisomerase & original description:... 0.05 OrthoFinder output from all 47 species
Ehy_g26403 No alias type-Ia DNA topoisomerase & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01035576001 No alias Cell cycle.organelle machineries.DNA replication.type-Ia... 0.02 OrthoFinder output from all 47 species
LOC_Os06g16980.1 LOC_Os06g16980 type-Ia DNA topoisomerase 0.02 OrthoFinder output from all 47 species
Nbi_g24909 No alias type-Ia DNA topoisomerase & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g21728 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g37104 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g49243 No alias type-Ia DNA topoisomerase & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0226.g026330 No alias type-Ia DNA topoisomerase & original description: CDS=286-4206 0.04 OrthoFinder output from all 47 species
Sam_g28178 No alias type-Ia DNA topoisomerase & original description: none 0.04 OrthoFinder output from all 47 species
Zm00001e036824_P001 Zm00001e036824 type-Ia DNA topoisomerase 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0003916 DNA topoisomerase activity IEA Interproscan
BP GO:0006265 DNA topological change IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP HCCA
CC GO:0005759 mitochondrial matrix IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0016747 acyltransferase activity, transferring groups other than amino-acyl groups IEP HCCA
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP HCCA
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP HCCA
MF GO:0016887 ATP hydrolysis activity IEP HCCA
CC GO:0031974 membrane-enclosed lumen IEP HCCA
CC GO:0043233 organelle lumen IEP HCCA
CC GO:0070013 intracellular organelle lumen IEP HCCA
InterPro domains Description Start Stop
IPR006171 TOPRIM_domain 158 271
IPR025589 Toprim_C_rpt 839 899
IPR013497 Topo_IA_cen 290 730
No external refs found!