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  5. Msp_g47131

Msp_g47131 (PDF2)


Aliases : PDF2

Description : HD-ZIP IV-type transcription factor & original description: none


Gene families : OG0000253 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000253_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Msp_g47131

Target Alias Description ECC score Gene Family Method Actions
Ala_g15179 PDF2 HD-ZIP IV-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Als_g16392 PDF2 HD-ZIP IV-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g13483 PDF2 HD-ZIP IV-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Ceric.01G001800.1 PDF2, Ceric.01G001800 HD-ZIP IV-type transcription factor & original... 0.04 OrthoFinder output from all 47 species
Dde_g05381 ATML1 HD-ZIP IV-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g17927 ATML1 HD-ZIP IV-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g02147 PDF2 HD-ZIP IV-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g45820 PDF2 HD-ZIP IV-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g46008 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000902 cell morphogenesis IEP HCCA
BP GO:0009653 anatomical structure morphogenesis IEP HCCA
MF GO:0016462 pyrophosphatase activity IEP HCCA
MF GO:0016787 hydrolase activity IEP HCCA
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP HCCA
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP HCCA
BP GO:0032502 developmental process IEP HCCA
MF GO:0047429 nucleoside triphosphate diphosphatase activity IEP HCCA
InterPro domains Description Start Stop
IPR002913 START_lipid-bd_dom 277 503
IPR001356 Homeobox_dom 101 152
No external refs found!