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  5. Msp_g43750

Msp_g43750


Description : not classified & original description: none


Gene families : OG0000359 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000359_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Msp_g43750

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00048p00141400 evm_27.TU.AmTr_v1... 4-coumarate--CoA ligase-like 6 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Als_g15645 OPCL1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g22282 OPCL1 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Azfi_s0230.g059166 OPCL1 not classified & original description: CDS=193-1959 0.04 OrthoFinder output from all 47 species
Gb_18695 OPCL1 4-coumarate--CoA ligase-like 5 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
MA_10432138g0010 OPCL1 4-coumarate--CoA ligase-like 5 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Pir_g37295 OPCL1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g65418 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g10259 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pp3c3_24370V3.1 Pp3c3_24370 AMP-dependent synthetase and ligase family protein 0.02 OrthoFinder output from all 47 species
Smo177466 OPCL1 4-coumarate--CoA ligase-like 5 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Smo231716 No alias 4-coumarate--CoA ligase-like 7 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Zm00001e000264_P001 OPCL1, Zm00001e000264 OPC-8:CoA synthetase 0.03 OrthoFinder output from all 47 species
Zm00001e033694_P002 Zm00001e033694 4-coumarate--CoA ligase-like 7 OS=Oryza sativa subsp.... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0006631 fatty acid metabolic process IEP HCCA
BP GO:0006633 fatty acid biosynthetic process IEP HCCA
BP GO:0008610 lipid biosynthetic process IEP HCCA
MF GO:0015399 primary active transmembrane transporter activity IEP HCCA
BP GO:0016053 organic acid biosynthetic process IEP HCCA
MF GO:0016747 acyltransferase activity, transferring groups other than amino-acyl groups IEP HCCA
MF GO:0022804 active transmembrane transporter activity IEP HCCA
MF GO:0030599 pectinesterase activity IEP HCCA
BP GO:0032787 monocarboxylic acid metabolic process IEP HCCA
BP GO:0042545 cell wall modification IEP HCCA
MF GO:0042626 ATPase-coupled transmembrane transporter activity IEP HCCA
BP GO:0044255 cellular lipid metabolic process IEP HCCA
BP GO:0045229 external encapsulating structure organization IEP HCCA
BP GO:0046394 carboxylic acid biosynthetic process IEP HCCA
MF GO:0052689 carboxylic ester hydrolase activity IEP HCCA
BP GO:0071554 cell wall organization or biogenesis IEP HCCA
BP GO:0071555 cell wall organization IEP HCCA
BP GO:0072330 monocarboxylic acid biosynthetic process IEP HCCA
MF GO:0140359 ABC-type transporter activity IEP HCCA
InterPro domains Description Start Stop
IPR000873 AMP-dep_Synth/Lig_com 45 453
IPR025110 AMP-bd_C 462 537
No external refs found!