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  5. Msp_g42589

Msp_g42589 (NFD4, HMGB4, NFD04)


Aliases : NFD4, HMGB4, NFD04

Description : DNA bending architectural protein *(HMG-B) & original description: none


Gene families : OG0000118 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000118_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Msp_g42589
Cluster HCCA: Cluster_107

Target Alias Description ECC score Gene Family Method Actions
Adi_g122615 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene57132.t1 Aspi01Gene57132 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ceric.05G057900.1 NFD2, HMG BETA... DNA bending architectural protein *(HMG-B) & original... 0.03 OrthoFinder output from all 47 species
Cre11.g481050 ATHMG, HMG, SSRP1, NFD FACT complex subunit SSRP1 OS=Arabidopsis thaliana 0.01 OrthoFinder output from all 47 species
Ehy_g19258 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01026642001 NFD2, HMG BETA... HMG1/2-like protein OS=Glycine max 0.02 OrthoFinder output from all 47 species
Len_g16155 NFD03, HMGB3, NFD3 DNA bending architectural protein *(HMG-B) & original... 0.03 OrthoFinder output from all 47 species
Lfl_g05824 NFD03, HMGB3, NFD3 DNA bending architectural protein *(HMG-B) & original... 0.02 OrthoFinder output from all 47 species
MA_75417g0010 NFD2, HMG BETA... HMG1/2-like protein OS=Glycine max (sp|p26585|hmgl_soybn : 88.2) 0.02 OrthoFinder output from all 47 species
Nbi_g29699 NFD03, HMGB3, NFD3 DNA bending architectural protein *(HMG-B) & original... 0.08 OrthoFinder output from all 47 species
Ppi_g61736 No alias DNA bending architectural protein *(HMG-B) & original... 0.06 OrthoFinder output from all 47 species
Sacu_v1.1_s0055.g014473 HMGB6 DNA bending architectural protein *(HMG-B) & original... 0.02 OrthoFinder output from all 47 species
Spa_g11610 NFD03, HMGB3, NFD3 DNA bending architectural protein *(HMG-B) & original... 0.04 OrthoFinder output from all 47 species
Tin_g00319 NFD03, HMGB3, NFD3 DNA bending architectural protein *(HMG-B) & original... 0.03 OrthoFinder output from all 47 species
Tin_g44303 NFD4, HMGB4, NFD04 DNA bending architectural protein *(HMG-B) & original... 0.07 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0004519 endonuclease activity IEP HCCA
MF GO:0004672 protein kinase activity IEP HCCA
BP GO:0006308 DNA catabolic process IEP HCCA
BP GO:0006468 protein phosphorylation IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
MF GO:0008236 serine-type peptidase activity IEP HCCA
BP GO:0009057 macromolecule catabolic process IEP HCCA
BP GO:0009719 response to endogenous stimulus IEP HCCA
BP GO:0009725 response to hormone IEP HCCA
BP GO:0009733 response to auxin IEP HCCA
BP GO:0010033 response to organic substance IEP HCCA
BP GO:0016310 phosphorylation IEP HCCA
MF GO:0016787 hydrolase activity IEP HCCA
MF GO:0017171 serine hydrolase activity IEP HCCA
BP GO:0019439 aromatic compound catabolic process IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
MF GO:0033926 glycopeptide alpha-N-acetylgalactosaminidase activity IEP HCCA
BP GO:0034655 nucleobase-containing compound catabolic process IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
BP GO:0042221 response to chemical IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044248 cellular catabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
BP GO:0044270 cellular nitrogen compound catabolic process IEP HCCA
BP GO:0046700 heterocycle catabolic process IEP HCCA
MF GO:0050660 flavin adenine dinucleotide binding IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
MF GO:0140096 catalytic activity, acting on a protein IEP HCCA
MF GO:0140103 catalytic activity, acting on a glycoprotein IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
BP GO:1901361 organic cyclic compound catabolic process IEP HCCA
InterPro domains Description Start Stop
IPR009071 HMG_box_dom 120 189
No external refs found!