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  5. Msp_g36122

Msp_g36122


Description : component *(eL6) of large ribosomal-subunit (LSU) proteome & original description: none


Gene families : OG0001317 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001317_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Msp_g36122

Target Alias Description ECC score Gene Family Method Actions
AT1G18540 No alias Ribosomal protein L6 family protein 0.03 OrthoFinder output from all 47 species
AT1G74050 No alias Ribosomal protein L6 family protein 0.07 OrthoFinder output from all 47 species
AT1G74060 No alias Ribosomal protein L6 family protein 0.03 OrthoFinder output from all 47 species
Ceric.29G025100.1 Ceric.29G025100 component *(eL6) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Cpa|evm.model.tig00021127.127 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.02 OrthoFinder output from all 47 species
Cre01.g011000 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.03 OrthoFinder output from all 47 species
Dac_g11635 No alias component *(eL6) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Dcu_g34737 No alias component *(eL6) of large ribosomal-subunit (LSU)... 0.06 OrthoFinder output from all 47 species
Ehy_g29529 No alias component *(eL6) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
LOC_Os02g37862.1 LOC_Os02g37862 component RPL6 of LSU proteome component 0.04 OrthoFinder output from all 47 species
LOC_Os04g39700.1 LOC_Os04g39700 component RPL6 of LSU proteome component 0.03 OrthoFinder output from all 47 species
MA_108607g0010 No alias component RPL6 of LSU proteome component 0.02 OrthoFinder output from all 47 species
Mp3g11670.1 No alias component RPL6 of LSU proteome component 0.02 OrthoFinder output from all 47 species
Pp3c14_4160V3.1 Pp3c14_4160 Ribosomal protein L6 family protein 0.01 OrthoFinder output from all 47 species
Pp3c1_24300V3.1 Pp3c1_24300 Ribosomal protein L6 family protein 0.03 OrthoFinder output from all 47 species
Pp3c2_13300V3.1 Pp3c2_13300 Ribosomal protein L6 family protein 0.02 OrthoFinder output from all 47 species
Sam_g08583 No alias component *(eL6) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Sam_g08584 No alias component *(eL6) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Solyc04g014720.4.1 Solyc04g014720 component RPL6 of LSU proteome component 0.03 OrthoFinder output from all 47 species
Solyc05g054070.4.1 Solyc05g054070 component RPL6 of LSU proteome component 0.03 OrthoFinder output from all 47 species
Solyc11g012110.2.1 Solyc11g012110 component RPL6 of LSU proteome component 0.03 OrthoFinder output from all 47 species
Tin_g01561 No alias component *(eL6) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Zm00001e022840_P001 Zm00001e022840 component RPL6 of LSU proteome component 0.04 OrthoFinder output from all 47 species
Zm00001e022841_P001 Zm00001e022841 component RPL6 of LSU proteome component 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0005488 binding IEP HCCA
BP GO:0006457 protein folding IEP HCCA
BP GO:0006801 superoxide metabolic process IEP HCCA
MF GO:0016462 pyrophosphatase activity IEP HCCA
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP HCCA
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP HCCA
MF GO:0016887 ATP hydrolysis activity IEP HCCA
MF GO:0017111 ribonucleoside triphosphate phosphatase activity IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043169 cation binding IEP HCCA
MF GO:0044183 protein folding chaperone IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
MF GO:0051082 unfolded protein binding IEP HCCA
BP GO:0072593 reactive oxygen species metabolic process IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
MF GO:0140662 ATP-dependent protein folding chaperone IEP HCCA
InterPro domains Description Start Stop
IPR000915 60S_ribosomal_L6E 124 230
IPR005568 Ribosomal_L6_N 5 50
No external refs found!