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  5. Msp_g29578

Msp_g29578


Description : not classified & original description: none


Gene families : OG0000296 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000296_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Msp_g29578
Cluster HCCA: Cluster_33

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00059p00216110 evm_27.TU.AmTr_v1... Protein biosynthesis.translation elongation.eEF1A... 0.04 OrthoFinder output from all 47 species
AMTR_s00066p00072310 evm_27.TU.AmTr_v1... Protein biosynthesis.translation elongation.eEF1A... 0.08 OrthoFinder output from all 47 species
AT1G07920 No alias GTP binding Elongation factor Tu family protein 0.05 OrthoFinder output from all 47 species
AT1G07930 No alias GTP binding Elongation factor Tu family protein 0.04 OrthoFinder output from all 47 species
AT1G07940 No alias GTP binding Elongation factor Tu family protein 0.04 OrthoFinder output from all 47 species
AT5G60390 No alias GTP binding Elongation factor Tu family protein 0.15 OrthoFinder output from all 47 species
Ala_g09896 No alias aminoacyl-tRNA binding factor *(eEF1A)) & original... 0.04 OrthoFinder output from all 47 species
Ala_g31488 No alias aminoacyl-tRNA binding factor *(eEF1A)) & original... 0.07 OrthoFinder output from all 47 species
Als_g11645 No alias aminoacyl-tRNA binding factor *(eEF1A)) & original... 0.06 OrthoFinder output from all 47 species
Als_g26660 No alias aminoacyl-tRNA binding factor *(eEF1A)) & original... 0.03 OrthoFinder output from all 47 species
Als_g39127 No alias aminoacyl-tRNA binding factor *(eEF1A)) & original... 0.01 OrthoFinder output from all 47 species
Als_g51450 No alias aminoacyl-tRNA binding factor *(eEF1A)) & original... 0.01 OrthoFinder output from all 47 species
Aop_g09508 No alias aminoacyl-tRNA binding factor *(eEF1A)) & original... 0.03 OrthoFinder output from all 47 species
Aop_g20702 No alias aminoacyl-tRNA binding factor *(eEF1A)) & original... 0.11 OrthoFinder output from all 47 species
Azfi_s0291.g063341 No alias aminoacyl-tRNA binding factor *(eEF1A)) & original... 0.04 OrthoFinder output from all 47 species
Cba_g03670 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g03921 No alias aminoacyl-tRNA binding factor *(eEF1A)) & original... 0.03 OrthoFinder output from all 47 species
Ceric.09G081400.1 Ceric.09G081400 aminoacyl-tRNA binding factor *(eEF1A)) & original... 0.05 OrthoFinder output from all 47 species
Ceric.11G084400.1 Ceric.11G084400 aminoacyl-tRNA binding factor *(eEF1A)) & original... 0.05 OrthoFinder output from all 47 species
Ceric.1Z125000.1 Ceric.1Z125000 aminoacyl-tRNA binding factor *(eEF1A)) & original... 0.03 OrthoFinder output from all 47 species
Ceric.1Z240400.1 Ceric.1Z240400 aminoacyl-tRNA binding factor *(eEF1A)) & original... 0.03 OrthoFinder output from all 47 species
Ceric.31G073700.1 Ceric.31G073700 aminoacyl-tRNA binding factor *(eEF1A)) & original... 0.07 OrthoFinder output from all 47 species
Cpa|evm.model.tig00021352.57 No alias Protein biosynthesis.translation elongation.eEF1A... 0.06 OrthoFinder output from all 47 species
Cre12.g498600 No alias Elongation factor 1-alpha OS=Glycine max 0.01 OrthoFinder output from all 47 species
Dac_g22627 No alias aminoacyl-tRNA binding factor *(eEF1A)) & original... 0.07 OrthoFinder output from all 47 species
Dac_g40329 No alias aminoacyl-tRNA binding factor *(eEF1A)) & original... 0.06 OrthoFinder output from all 47 species
Dcu_g09531 No alias aminoacyl-tRNA binding factor *(eEF1A)) & original... 0.06 OrthoFinder output from all 47 species
Dde_g04362 No alias aminoacyl-tRNA binding factor *(eEF1A)) & original... 0.04 OrthoFinder output from all 47 species
Ehy_g06792 No alias aminoacyl-tRNA binding factor *(eEF1A)) & original... 0.03 OrthoFinder output from all 47 species
GSVIVT01025147001 No alias Elongation factor 1-alpha OS=Manihot esculenta 0.01 OrthoFinder output from all 47 species
GSVIVT01025638001 No alias Elongation factor 1-alpha OS=Zea mays 0.05 OrthoFinder output from all 47 species
LOC_Os03g08010.1 LOC_Os03g08010 aminoacyl-tRNA binding factor (eEF1A) 0.12 OrthoFinder output from all 47 species
LOC_Os03g08020.1 LOC_Os03g08020 aminoacyl-tRNA binding factor (eEF1A) 0.08 OrthoFinder output from all 47 species
LOC_Os03g08050.1 LOC_Os03g08050 aminoacyl-tRNA binding factor (eEF1A) 0.1 OrthoFinder output from all 47 species
Len_g28219 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Len_g28220 No alias aminoacyl-tRNA binding factor *(eEF1A)) & original... 0.04 OrthoFinder output from all 47 species
Len_g51156 No alias aminoacyl-tRNA binding factor *(eEF1A)) & original... 0.03 OrthoFinder output from all 47 species
Len_g55835 No alias aminoacyl-tRNA binding factor *(eEF1A)) & original... 0.03 OrthoFinder output from all 47 species
Lfl_g17369 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g22816 No alias aminoacyl-tRNA binding factor *(eEF1A)) & original... 0.03 OrthoFinder output from all 47 species
MA_101560g0010 No alias Elongation factor 1-alpha OS=Hordeum vulgare... 0.02 OrthoFinder output from all 47 species
MA_505653g0010 No alias Elongation factor 1-alpha OS=Triticum aestivum... 0.03 OrthoFinder output from all 47 species
MA_56364g0010 No alias Elongation factor 1-alpha OS=Triticum aestivum... 0.03 OrthoFinder output from all 47 species
MA_781870g0010 No alias Elongation factor 1-alpha OS=Triticum aestivum... 0.02 OrthoFinder output from all 47 species
Mp3g23400.1 No alias aminoacyl-tRNA binding factor (eEF1A) 0.17 OrthoFinder output from all 47 species
Mp6g00930.1 No alias Elongation factor 1-alpha OS=Vicia faba... 0.01 OrthoFinder output from all 47 species
Nbi_g06194 No alias aminoacyl-tRNA binding factor *(eEF1A)) & original... 0.03 OrthoFinder output from all 47 species
Nbi_g08139 No alias aminoacyl-tRNA binding factor *(eEF1A)) & original... 0.02 OrthoFinder output from all 47 species
Pir_g11226 No alias aminoacyl-tRNA binding factor *(eEF1A)) & original... 0.03 OrthoFinder output from all 47 species
Pir_g29386 No alias aminoacyl-tRNA binding factor *(eEF1A)) & original... 0.04 OrthoFinder output from all 47 species
Pir_g29775 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pp3c2_6770V3.1 Pp3c2_6770 GTP binding Elongation factor Tu family protein 0.01 OrthoFinder output from all 47 species
Sam_g16997 No alias aminoacyl-tRNA binding factor *(eEF1A)) & original... 0.06 OrthoFinder output from all 47 species
Sam_g16998 No alias aminoacyl-tRNA binding factor *(eEF1A)) & original... 0.04 OrthoFinder output from all 47 species
Sam_g16999 No alias aminoacyl-tRNA binding factor *(eEF1A)) & original... 0.1 OrthoFinder output from all 47 species
Sam_g28089 No alias not classified & original description: none 0.08 OrthoFinder output from all 47 species
Sam_g29350 No alias aminoacyl-tRNA binding factor *(eEF1A)) & original... 0.1 OrthoFinder output from all 47 species
Sam_g31306 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g37732 No alias aminoacyl-tRNA binding factor *(eEF1A)) & original... 0.03 OrthoFinder output from all 47 species
Sam_g39768 No alias aminoacyl-tRNA binding factor *(eEF1A)) & original... 0.08 OrthoFinder output from all 47 species
Sam_g49146 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Smo169717 No alias Protein biosynthesis.translation elongation.eEF1A... 0.03 OrthoFinder output from all 47 species
Solyc06g005060.3.1 Solyc06g005060 aminoacyl-tRNA binding factor (eEF1A) 0.06 OrthoFinder output from all 47 species
Solyc11g150146.1.1 Solyc11g150146 aminoacyl-tRNA binding factor (eEF1A) 0.04 OrthoFinder output from all 47 species
Spa_g08926 No alias aminoacyl-tRNA binding factor *(eEF1A)) & original... 0.06 OrthoFinder output from all 47 species
Spa_g18945 No alias aminoacyl-tRNA binding factor *(eEF1A)) & original... 0.03 OrthoFinder output from all 47 species
Spa_g24424 No alias aminoacyl-tRNA binding factor *(eEF1A)) & original... 0.05 OrthoFinder output from all 47 species
Spa_g24425 No alias aminoacyl-tRNA binding factor *(eEF1A)) & original... 0.06 OrthoFinder output from all 47 species
Spa_g50272 No alias aminoacyl-tRNA binding factor *(eEF1A)) & original... 0.03 OrthoFinder output from all 47 species
Spa_g50273 No alias aminoacyl-tRNA binding factor *(eEF1A)) & original... 0.07 OrthoFinder output from all 47 species
Tin_g11762 No alias aminoacyl-tRNA binding factor *(eEF1A)) & original... 0.05 OrthoFinder output from all 47 species
Tin_g11763 No alias aminoacyl-tRNA binding factor *(eEF1A)) & original... 0.06 OrthoFinder output from all 47 species
Zm00001e026762_P001 Zm00001e026762 aminoacyl-tRNA binding factor (eEF1A) 0.06 OrthoFinder output from all 47 species
Zm00001e026763_P003 Zm00001e026763 aminoacyl-tRNA binding factor (eEF1A) 0.07 OrthoFinder output from all 47 species
Zm00001e030598_P002 Zm00001e030598 aminoacyl-tRNA binding factor (eEF1A) 0.04 OrthoFinder output from all 47 species
Zm00001e031390_P004 Zm00001e031390 aminoacyl-tRNA binding factor (eEF1A) 0.08 OrthoFinder output from all 47 species
Zm00001e031391_P002 Zm00001e031391 aminoacyl-tRNA binding factor (eEF1A) 0.08 OrthoFinder output from all 47 species
Zm00001e031407_P001 Zm00001e031407 aminoacyl-tRNA binding factor (eEF1A) 0.05 OrthoFinder output from all 47 species
Zm00001e037355_P001 Zm00001e037355 aminoacyl-tRNA binding factor (eEF1A) 0.06 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003735 structural constituent of ribosome IEP HCCA
MF GO:0003746 translation elongation factor activity IEP HCCA
MF GO:0003924 GTPase activity IEP HCCA
MF GO:0005198 structural molecule activity IEP HCCA
MF GO:0005488 binding IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005840 ribosome IEP HCCA
BP GO:0006412 translation IEP HCCA
BP GO:0006414 translational elongation IEP HCCA
BP GO:0006518 peptide metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
MF GO:0008135 translation factor activity, RNA binding IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034645 cellular macromolecule biosynthetic process IEP HCCA
BP GO:0043043 peptide biosynthetic process IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
BP GO:0043603 amide metabolic process IEP HCCA
BP GO:0043604 amide biosynthetic process IEP HCCA
MF GO:0044183 protein folding chaperone IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
MF GO:0045182 translation regulator activity IEP HCCA
MF GO:0051536 iron-sulfur cluster binding IEP HCCA
MF GO:0051537 2 iron, 2 sulfur cluster binding IEP HCCA
MF GO:0051540 metal cluster binding IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
MF GO:0090079 translation regulator activity, nucleic acid binding IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
MF GO:0140662 ATP-dependent protein folding chaperone IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
BP GO:1901566 organonitrogen compound biosynthetic process IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR004160 Transl_elong_EFTu/EF1A_C 1 78
No external refs found!