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  5. Msp_g27335

Msp_g27335


Description : organic cation transporter *(OCT) & original description: none


Gene families : OG0003439 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003439_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Msp_g27335
Cluster HCCA: Cluster_13

Target Alias Description ECC score Gene Family Method Actions
Adi_g020791 No alias organic cation transporter *(OCT) & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g22319 No alias organic cation transporter *(OCT) & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.05G088000.1 Ceric.05G088000 not classified & original description: pacid=50577390... 0.02 OrthoFinder output from all 47 species
Cre07.g337850 PHT1;9 Solute transport.carrier-mediated transport.MFS... 0.01 OrthoFinder output from all 47 species
Gb_23364 No alias nicotinate transporter (NiaP) 0.03 OrthoFinder output from all 47 species
Gb_23365 No alias Organic cation/carnitine transporter 7 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
LOC_Os04g51970.2 LOC_Os04g51970 nicotinate transporter (NiaP) 0.03 OrthoFinder output from all 47 species
LOC_Os09g38690.1 LOC_Os09g38690 nicotinate transporter (NiaP) 0.01 OrthoFinder output from all 47 species
Tin_g08582 No alias organic cation transporter *(OCT) & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e005051_P003 Zm00001e005051 nicotinate transporter (NiaP) 0.04 OrthoFinder output from all 47 species
Zm00001e005052_P003 Zm00001e005052 nicotinate transporter (NiaP) 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0016020 membrane IEA Interproscan
MF GO:0022857 transmembrane transporter activity IEA Interproscan
BP GO:0055085 transmembrane transport IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0005216 monoatomic ion channel activity IEP HCCA
MF GO:0005543 phospholipid binding IEP HCCA
MF GO:0008289 lipid binding IEP HCCA
MF GO:0015267 channel activity IEP HCCA
MF GO:0022803 passive transmembrane transporter activity IEP HCCA
MF GO:0035091 phosphatidylinositol binding IEP HCCA
InterPro domains Description Start Stop
IPR005828 MFS_sugar_transport-like 204 609
No external refs found!