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  5. Msp_g26178

Msp_g26178 (VCR)


Aliases : VCR

Description : scaffold component *(VCS) of mRNA decapping complex & original description: none


Gene families : OG0001030 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001030_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Msp_g26178
Cluster HCCA: Cluster_164

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00061p00131900 VCS,... RNA processing.RNA decay.deadenylation-dependent... 0.05 OrthoFinder output from all 47 species
AT3G13300 VCS Transducin/WD40 repeat-like superfamily protein 0.06 OrthoFinder output from all 47 species
Adi_g055830 VCS scaffold component *(VCS) of mRNA decapping complex &... 0.07 OrthoFinder output from all 47 species
Aev_g04893 VCS scaffold component *(VCS) of mRNA decapping complex &... 0.05 OrthoFinder output from all 47 species
Ala_g11471 VCS scaffold component *(VCS) of mRNA decapping complex &... 0.03 OrthoFinder output from all 47 species
Als_g15285 VCS not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g63425 VCR scaffold component *(VCS) of mRNA decapping complex &... 0.05 OrthoFinder output from all 47 species
Aob_g03608 VCS scaffold component *(VCS) of mRNA decapping complex &... 0.03 OrthoFinder output from all 47 species
Cba_g04739 VCS scaffold component *(VCS) of mRNA decapping complex &... 0.02 OrthoFinder output from all 47 species
Cba_g27245 VCS scaffold component *(VCS) of mRNA decapping complex &... 0.06 OrthoFinder output from all 47 species
Ceric.33G025800.1 VCS, Ceric.33G025800 scaffold component *(VCS) of mRNA decapping complex &... 0.05 OrthoFinder output from all 47 species
Dcu_g05835 VCS scaffold component *(VCS) of mRNA decapping complex &... 0.07 OrthoFinder output from all 47 species
Dcu_g11716 VCS scaffold component *(VCS) of mRNA decapping complex &... 0.06 OrthoFinder output from all 47 species
GSVIVT01006976001 VCS RNA processing.RNA decay.deadenylation-dependent... 0.03 OrthoFinder output from all 47 species
GSVIVT01014783001 VCS RNA processing.RNA decay.deadenylation-dependent... 0.08 OrthoFinder output from all 47 species
Gb_04906 VCS scaffold component VCS of mRNA decapping complex 0.05 OrthoFinder output from all 47 species
LOC_Os02g49090.1 VCS, LOC_Os02g49090 scaffold component VCS of mRNA decapping complex 0.03 OrthoFinder output from all 47 species
LOC_Os06g19660.1 VCS, LOC_Os06g19660 scaffold component VCS of mRNA decapping complex 0.05 OrthoFinder output from all 47 species
Lfl_g18274 VCS scaffold component *(VCS) of mRNA decapping complex &... 0.03 OrthoFinder output from all 47 species
MA_10427487g0020 VCS Varicose-related protein OS=Arabidopsis thaliana... 0.06 OrthoFinder output from all 47 species
MA_10431534g0010 VCR Varicose-related protein OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species
MA_10431534g0020 VCS Enhancer of mRNA-decapping protein 4 OS=Arabidopsis... 0.05 OrthoFinder output from all 47 species
MA_10431534g0030 VCS scaffold component VCS of mRNA decapping complex 0.03 OrthoFinder output from all 47 species
MA_39123g0010 VCS Enhancer of mRNA-decapping protein 4 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Mp3g11710.1 VCS scaffold component VCS of mRNA decapping complex 0.02 OrthoFinder output from all 47 species
Nbi_g01496 VCS scaffold component *(VCS) of mRNA decapping complex &... 0.03 OrthoFinder output from all 47 species
Ore_g09332 VCS scaffold component *(VCS) of mRNA decapping complex &... 0.04 OrthoFinder output from all 47 species
Pir_g25441 VCS scaffold component *(VCS) of mRNA decapping complex &... 0.03 OrthoFinder output from all 47 species
Pnu_g13830 VCS scaffold component *(VCS) of mRNA decapping complex &... 0.03 OrthoFinder output from all 47 species
Pnu_g23486 VCS not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g03283 VCS scaffold component *(VCS) of mRNA decaPping complex &... 0.03 OrthoFinder output from all 47 species
Spa_g07074 VCR scaffold component *(VCS) of mRNA decapping complex &... 0.03 OrthoFinder output from all 47 species
Spa_g10517 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g37076 VCR not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g08563 VCS scaffold component *(VCS) of mRNA decapping complex &... 0.06 OrthoFinder output from all 47 species
Zm00001e015689_P001 VCS, Zm00001e015689 scaffold component VCS of mRNA decapping complex 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003682 chromatin binding IEP HCCA
MF GO:0003689 DNA clamp loader activity IEP HCCA
MF GO:0004842 ubiquitin-protein transferase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
CC GO:0005663 DNA replication factor C complex IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006260 DNA replication IEP HCCA
BP GO:0006606 protein import into nucleus IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
BP GO:0006913 nucleocytoplasmic transport IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
BP GO:0008104 protein localization IEP HCCA
BP GO:0015031 protein transport IEP HCCA
MF GO:0019787 ubiquitin-like protein transferase activity IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0033036 macromolecule localization IEP HCCA
BP GO:0033365 protein localization to organelle IEP HCCA
BP GO:0034504 protein localization to nucleus IEP HCCA
BP GO:0045184 establishment of protein localization IEP HCCA
BP GO:0046907 intracellular transport IEP HCCA
BP GO:0051169 nuclear transport IEP HCCA
BP GO:0051170 import into nucleus IEP HCCA
BP GO:0051641 cellular localization IEP HCCA
BP GO:0051649 establishment of localization in cell IEP HCCA
BP GO:0070727 cellular macromolecule localization IEP HCCA
BP GO:0071702 organic substance transport IEP HCCA
BP GO:0071705 nitrogen compound transport IEP HCCA
BP GO:0072594 establishment of protein localization to organelle IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
MF GO:0140658 ATP-dependent chromatin remodeler activity IEP HCCA
InterPro domains Description Start Stop
IPR032401 EDC4_WD40 231 546
No external refs found!