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  5. Msp_g24516

Msp_g24516


Description : not classified & original description: none


Gene families : OG0002205 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002205_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Msp_g24516
Cluster HCCA: Cluster_164

Target Alias Description ECC score Gene Family Method Actions
Adi_g011978 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ala_g07371 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ala_g07797 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Als_g08351 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Als_g23973 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g10927 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g10664 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene49845.t1 Aspi01Gene49845 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene63716.t1 Aspi01Gene63716 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g59047 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.33G056900.1 Ceric.33G056900 not classified & original description: pacid=50606463... 0.08 OrthoFinder output from all 47 species
Dcu_g04155 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g09958 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g04065 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01034750001 No alias No description available 0.03 OrthoFinder output from all 47 species
GSVIVT01035731001 No alias No description available 0.06 OrthoFinder output from all 47 species
Gb_25776 No alias no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
Lfl_g12408 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_10428588g0010 No alias no hits & (original description: none) 0.08 OrthoFinder output from all 47 species
MA_37588g0020 No alias no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
Mp8g09190.1 No alias no hits & (original description: none) 0.08 OrthoFinder output from all 47 species
Nbi_g02509 No alias not classified & original description: none 0.09 OrthoFinder output from all 47 species
Pir_g49147 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Smo444069 No alias No description available 0.04 OrthoFinder output from all 47 species
Solyc08g067920.3.1 Solyc08g067920 no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
Spa_g15474 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g21971 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Tin_g13150 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Zm00001e025916_P001 Zm00001e025916 no hits & (original description: none) 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003712 transcription coregulator activity IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
BP GO:0006357 regulation of transcription by RNA polymerase II IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
CC GO:0016592 mediator complex IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140110 transcription regulator activity IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
MF GO:0140658 ATP-dependent chromatin remodeler activity IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR019542 Enhancer_polycomb-like_N 1343 1424
No external refs found!