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  5. Msp_g24079

Msp_g24079 (ATRAD18, SMC6B, MIM)


Aliases : ATRAD18, SMC6B, MIM

Description : component *(SMC6) of homologous recombination repair Smc5-Smc6 complex & original description: none


Gene families : OG0004807 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004807_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Msp_g24079

Target Alias Description ECC score Gene Family Method Actions
AT5G07660 SMC6A structural maintenance of chromosomes 6A 0.03 OrthoFinder output from all 47 species
Ceric.03G053800.1 ATRAD18, SMC6B,... component *(SMC6) of homologous recombination repair... 0.04 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000600.10 ATRAD18, SMC6B, MIM DNA damage response.DNA repair mechanisms.homologous... 0.02 OrthoFinder output from all 47 species
MA_9752383g0010 SMC6A Structural maintenance of chromosomes protein 6B... 0.03 OrthoFinder output from all 47 species
Pnu_g09019 SMC6A component *(SMC6) of homologous recombination repair... 0.02 OrthoFinder output from all 47 species
Smo60327 ATRAD18, SMC6B, MIM DNA damage response.DNA repair mechanisms.homologous... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0004645 1,4-alpha-oligoglucan phosphorylase activity IEP HCCA
CC GO:0005634 nucleus IEP HCCA
BP GO:0006476 protein deacetylation IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
MF GO:0008184 glycogen phosphorylase activity IEP HCCA
MF GO:0008236 serine-type peptidase activity IEP HCCA
BP GO:0016570 histone modification IEP HCCA
BP GO:0016575 histone deacetylation IEP HCCA
MF GO:0016758 hexosyltransferase activity IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
MF GO:0016787 hydrolase activity IEP HCCA
MF GO:0016887 ATP hydrolysis activity IEP HCCA
MF GO:0017171 serine hydrolase activity IEP HCCA
CC GO:0019867 outer membrane IEP HCCA
MF GO:0033926 glycopeptide alpha-N-acetylgalactosaminidase activity IEP HCCA
BP GO:0035601 protein deacylation IEP HCCA
BP GO:0098732 macromolecule deacylation IEP HCCA
MF GO:0140103 catalytic activity, acting on a glycoprotein IEP HCCA
InterPro domains Description Start Stop
IPR003395 RecF/RecN/SMC_N 24 1047
No external refs found!