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  5. Msp_g23875

Msp_g23875 (GTA02, GTA2)


Aliases : GTA02, GTA2

Description : component *(SPT5) of SPT4/5 transcription elongation factor complex & original description: none


Gene families : OG0002736 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002736_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Msp_g23875
Cluster HCCA: Cluster_63

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00002p00250180 GTA02, GTA2,... RNA biosynthesis.RNA polymerase II-dependent... 0.02 OrthoFinder output from all 47 species
AT4G08350 GTA02, GTA2 global transcription factor group A2 0.04 OrthoFinder output from all 47 species
Ala_g11309 GTA02, GTA2 component *(SPT5) of SPT4/5 transcription elongation... 0.04 OrthoFinder output from all 47 species
GSVIVT01010022001 GTA02, GTA2 RNA biosynthesis.RNA polymerase II-dependent... 0.02 OrthoFinder output from all 47 species
GSVIVT01016203001 SPT5L, KTF1 Chromatin organisation.DNA methylation.canonical... 0.03 OrthoFinder output from all 47 species
Lfl_g05703 GTA02, GTA2 component *(SPT5) of SPT4/5 transcription elongation... 0.04 OrthoFinder output from all 47 species
Pir_g18253 GTA02, GTA2 component *(SPT5) of SPT4/5 transcription elongation... 0.03 OrthoFinder output from all 47 species
Solyc11g008150.3.1 SPT5L, KTF1,... RNA polymerase-V auxiliary factor (KTF1/SPT5L) 0.04 OrthoFinder output from all 47 species
Spa_g04271 GTA02, GTA2 component *(SPT5) of SPT4/5 transcription elongation... 0.08 OrthoFinder output from all 47 species
Tin_g41245 GTA02, GTA2 component *(SF3B2) of splicing factor 3B complex &... 0.06 OrthoFinder output from all 47 species
Zm00001e036210_P001 GTA02, GTA2,... component SPT5 of SPT4/5 transcription elongation factor complex 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003743 translation initiation factor activity IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0004057 arginyltransferase activity IEP HCCA
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP HCCA
MF GO:0004559 alpha-mannosidase activity IEP HCCA
MF GO:0004842 ubiquitin-protein transferase activity IEP HCCA
BP GO:0005996 monosaccharide metabolic process IEP HCCA
BP GO:0006013 mannose metabolic process IEP HCCA
BP GO:0006413 translational initiation IEP HCCA
BP GO:0006508 proteolysis IEP HCCA
MF GO:0008135 translation factor activity, RNA binding IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
MF GO:0015923 mannosidase activity IEP HCCA
BP GO:0016598 protein arginylation IEP HCCA
MF GO:0016746 acyltransferase activity IEP HCCA
MF GO:0016755 aminoacyltransferase activity IEP HCCA
MF GO:0016787 hydrolase activity IEP HCCA
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP HCCA
MF GO:0016887 ATP hydrolysis activity IEP HCCA
MF GO:0017111 ribonucleoside triphosphate phosphatase activity IEP HCCA
BP GO:0019318 hexose metabolic process IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
MF GO:0019787 ubiquitin-like protein transferase activity IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
MF GO:0045182 translation regulator activity IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
MF GO:0090079 translation regulator activity, nucleic acid binding IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0140096 catalytic activity, acting on a protein IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR005824 KOW 707 737
IPR005824 KOW 602 624
IPR005824 KOW 476 499
IPR005100 NGN-domain 176 260
IPR022581 Spt5_N 53 170
No external refs found!