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  5. Msp_g20542

Msp_g20542 (AFP3)


Aliases : AFP3

Description : not classified & original description: none


Gene families : OG0001010 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001010_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Msp_g20542
Cluster HCCA: Cluster_149

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00013p00255370 AFP3,... RNA biosynthesis.transcriptional repression.AFP/NINJA... 0.03 OrthoFinder output from all 47 species
AT1G69260 AFP1 ABI five binding protein 0.05 OrthoFinder output from all 47 species
AT3G29575 AFP3 ABI five binding protein 3 0.05 OrthoFinder output from all 47 species
Aev_g07969 AFP3 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aev_g35216 AFP3 transcriptional co-repressor *(AFP/NINJA) & original... 0.04 OrthoFinder output from all 47 species
Ala_g13840 NINJA not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g01831 NINJA transcriptional co-repressor *(AFP/NINJA) & original... 0.03 OrthoFinder output from all 47 species
Aop_g18858 AFP3 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g24141 AFP3 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g22338 AFP3 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g27786 NINJA not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g22166 AFP3 transcriptional co-repressor *(AFP/NINJA) & original... 0.05 OrthoFinder output from all 47 species
Dde_g22899 AFP3 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g28581 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g36399 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g48828 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
LOC_Os03g11550.1 AFP2, LOC_Os03g11550 transcriptional co-repressor (AFP/NINJA) 0.04 OrthoFinder output from all 47 species
LOC_Os03g30570.1 AFP2, LOC_Os03g30570 transcriptional co-repressor (AFP/NINJA) 0.04 OrthoFinder output from all 47 species
LOC_Os07g41160.1 AFP3, LOC_Os07g41160 transcriptional co-repressor (AFP/NINJA) 0.02 OrthoFinder output from all 47 species
Len_g15953 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Len_g16334 NINJA not classified & original description: none 0.05 OrthoFinder output from all 47 species
Lfl_g28105 NINJA not classified & original description: none 0.04 OrthoFinder output from all 47 species
MA_16384g0010 AFP3 transcriptional co-repressor (AFP/NINJA) 0.02 OrthoFinder output from all 47 species
Nbi_g25344 AFP3 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Smo446487 AFP3 RNA biosynthesis.transcriptional repression.AFP/NINJA... 0.04 OrthoFinder output from all 47 species
Solyc02g030633.1.1 AFP3, Solyc02g030633 transcriptional co-repressor (AFP/NINJA) 0.03 OrthoFinder output from all 47 species
Solyc04g005380.3.1 AFP2, Solyc04g005380 transcriptional co-repressor (AFP/NINJA) 0.04 OrthoFinder output from all 47 species
Spa_g07383 NINJA not classified & original description: none 0.05 OrthoFinder output from all 47 species
Tin_g31839 AFP3 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e035495_P001 AFP3, Zm00001e035495 transcriptional co-repressor (AFP/NINJA) 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
MF GO:0043565 sequence-specific DNA binding IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
InterPro domains Description Start Stop
IPR032308 TDBD 721 751
No external refs found!