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  5. Msp_g19924

Msp_g19924 (SIGB, SIG2, SIGA, SIG1, RPOD1)


Aliases : SIGB, SIG2, SIGA, SIG1, RPOD1

Description : basal Sigma-type transcription factor & original description: none


Gene families : OG0000565 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000565_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Msp_g19924

Target Alias Description ECC score Gene Family Method Actions
AT1G64860 SIGB, SIG2,... sigma factor A 0.03 OrthoFinder output from all 47 species
Ala_g12116 SIGB, SIG2,... basal Sigma-type transcription factor & original... 0.03 OrthoFinder output from all 47 species
Als_g61402 SIGB, SIG2,... basal Sigma-type transcription factor & original... 0.02 OrthoFinder output from all 47 species
Aspi01Gene43774.t1 ATSIG1, SIGB,... not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g05885 SIGB, SIG2,... basal Sigma-type transcription factor & original... 0.08 OrthoFinder output from all 47 species
Ceric.02G009200.1 SIGB, SIG2,... basal Sigma-type transcription factor & original... 0.03 OrthoFinder output from all 47 species
Ceric.02G083900.1 ATSIG1, SIGB,... basal Sigma-type transcription factor & original... 0.03 OrthoFinder output from all 47 species
Dde_g24733 ATSIG1, SIGB,... basal Sigma-type transcription factor & original... 0.03 OrthoFinder output from all 47 species
Ehy_g20636 ATSIG1, SIGB,... basal Sigma-type transcription factor & original... 0.02 OrthoFinder output from all 47 species
LOC_Os03g16430.1 ATSIG1, SIGB,... basal transcription factor (Sigma) 0.03 OrthoFinder output from all 47 species
LOC_Os08g14450.1 SIGF, SIG6,... basal transcription factor (Sigma) 0.03 OrthoFinder output from all 47 species
Lfl_g03177 SIGB, SIG2,... basal Sigma-type transcription factor & original... 0.04 OrthoFinder output from all 47 species
Ore_g32531 SIGB, SIG2,... basal Sigma-type transcription factor & original... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0017.g007071 ATSIG1, SIGB,... basal Sigma-type transcription factor & original... 0.03 OrthoFinder output from all 47 species
Sam_g19255 No alias basal Sigma-type transcription factor & original... 0.03 OrthoFinder output from all 47 species
Sam_g38609 No alias basal Sigma-type transcription factor & original... 0.03 OrthoFinder output from all 47 species
Smo266972 SIGB, SIG2,... RNA biosynthesis.organelle... 0.03 OrthoFinder output from all 47 species
Tin_g06059 SIGB, SIG2,... basal Sigma-type transcription factor & original... 0.04 OrthoFinder output from all 47 species
Zm00001e021683_P001 SIGB, SIG2,... basal transcription factor (Sigma) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEA Interproscan
BP GO:0006352 DNA-templated transcription initiation IEA Interproscan
BP GO:0006355 regulation of DNA-templated transcription IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004497 monooxygenase activity IEP HCCA
MF GO:0005506 iron ion binding IEP HCCA
MF GO:0016491 oxidoreductase activity IEP HCCA
MF GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEP HCCA
MF GO:0020037 heme binding IEP HCCA
MF GO:0043169 cation binding IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
MF GO:0046906 tetrapyrrole binding IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
InterPro domains Description Start Stop
IPR007627 RNA_pol_sigma70_r2 334 399
IPR007630 RNA_pol_sigma70_r4 509 559
No external refs found!