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  5. Msp_g17296

Msp_g17296


Description : not classified & original description: none


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Msp_g17296
Cluster HCCA: Cluster_139

Target Alias Description ECC score Gene Family Method Actions
AT4G16835 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 OrthoFinder output from all 47 species
AT5G65570 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 OrthoFinder output from all 47 species
Adi_g001917 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g021432 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g022088 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g054256 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g066118 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g097033 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g18129 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g02938 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g04109 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g07824 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g14340 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g18741 OTP86 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g20702 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g24748 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g32458 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g36206 No alias ssDNA-binding protein *(OSB) & original description: none 0.04 OrthoFinder output from all 47 species
Als_g03125 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g03235 OTP84 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g06049 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g06630 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g18130 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g47255 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g55111 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g55197 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g55234 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g23325 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g26873 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g28689 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aop_g35962 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene03942.t1 Aspi01Gene03942 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0038.g026305 EMB2758 not classified & original description: CDS=1-1827 0.03 OrthoFinder output from all 47 species
Azfi_s0349.g066473 No alias not classified & original description: CDS=1-1980 0.03 OrthoFinder output from all 47 species
Cba_g07299 No alias ssDNA-binding protein *(OSB) & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g16282 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g19896 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g19911 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g24621 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g29359 REME1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g29529 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g49960 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g67815 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g74667 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g76573 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ceric.04G002600.1 Ceric.04G002600 not classified & original description: pacid=50631990... 0.03 OrthoFinder output from all 47 species
Ceric.04G072400.1 Ceric.04G072400 not classified & original description: pacid=50630959... 0.03 OrthoFinder output from all 47 species
Ceric.05G036100.1 VAC1, ECB2,... not classified & original description: pacid=50578170... 0.03 OrthoFinder output from all 47 species
Ceric.06G034400.1 Ceric.06G034400 not classified & original description: pacid=50619664... 0.03 OrthoFinder output from all 47 species
Ceric.09G023800.1 Ceric.09G023800 not classified & original description: pacid=50587607... 0.03 OrthoFinder output from all 47 species
Ceric.09G065700.1 Ceric.09G065700 not classified & original description: pacid=50586915... 0.03 OrthoFinder output from all 47 species
Ceric.09G084300.1 Ceric.09G084300 not classified & original description: pacid=50586761... 0.03 OrthoFinder output from all 47 species
Ceric.11G040400.1 Ceric.11G040400 not classified & original description: pacid=50596720... 0.04 OrthoFinder output from all 47 species
Ceric.14G093100.1 EMB2758, Ceric.14G093100 not classified & original description: pacid=50634261... 0.03 OrthoFinder output from all 47 species
Ceric.18G013300.1 EMB2758, Ceric.18G013300 not classified & original description: pacid=50620993... 0.04 OrthoFinder output from all 47 species
Ceric.18G033700.1 OTP86, Ceric.18G033700 not classified & original description: pacid=50622086... 0.04 OrthoFinder output from all 47 species
Ceric.19G066400.1 Ceric.19G066400 not classified & original description: pacid=50576354... 0.03 OrthoFinder output from all 47 species
Ceric.1Z048400.1 Ceric.1Z048400 not classified & original description: pacid=50571131... 0.03 OrthoFinder output from all 47 species
Ceric.21G029400.1 Ceric.21G029400 not classified & original description: pacid=50602793... 0.04 OrthoFinder output from all 47 species
Ceric.22G051900.1 Ceric.22G051900 not classified & original description: pacid=50614015... 0.04 OrthoFinder output from all 47 species
Ceric.23G048800.1 Ceric.23G048800 not classified & original description: pacid=50611258... 0.04 OrthoFinder output from all 47 species
Ceric.26G017800.1 Ceric.26G017800 not classified & original description: pacid=50599016... 0.04 OrthoFinder output from all 47 species
Ceric.26G056100.1 Ceric.26G056100 not classified & original description: pacid=50599681... 0.04 OrthoFinder output from all 47 species
Ceric.35G003800.1 Ceric.35G003800 not classified & original description: pacid=50581275... 0.03 OrthoFinder output from all 47 species
Ceric.37G010300.1 Ceric.37G010300 not classified & original description: pacid=50616652... 0.03 OrthoFinder output from all 47 species
Ceric.37G034100.1 Ceric.37G034100 not classified & original description: pacid=50616957... 0.04 OrthoFinder output from all 47 species
Ceric.38G032700.1 Ceric.38G032700 not classified & original description: pacid=50579462... 0.03 OrthoFinder output from all 47 species
Ceric.39G043600.1 Ceric.39G043600 not classified & original description: pacid=50582616... 0.03 OrthoFinder output from all 47 species
Dac_g03824 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dac_g10038 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g16952 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g30267 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g32635 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g35260 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g43859 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g05681 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g07156 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g07750 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dcu_g08804 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g17110 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g45798 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g16461 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g23896 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g44017 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g12128 No alias ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g13146 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g19239 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g19886 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g21772 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
LOC_Os06g30940.1 LOC_Os06g30940 Pentatricopeptide repeat-containing protein At3g53360,... 0.04 OrthoFinder output from all 47 species
Len_g04805 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g05426 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g18045 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g18047 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g18307 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g19025 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g26586 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g33724 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g49951 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g54973 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g03398 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g05729 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g07307 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g07396 OTP84 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g07678 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g07808 VAC1, ECB2, ATECB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g11837 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g13946 OTP86 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Lfl_g24046 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g33937 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g37426 OTP86 not classified & original description: none 0.04 OrthoFinder output from all 47 species
MA_8893194g0010 MEF1 RNA editing factor (MEF1) 0.03 OrthoFinder output from all 47 species
Nbi_g05873 OTP86 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g09316 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g15283 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g28137 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g39417 No alias ssDNA-binding protein *(OSB) & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g44738 VAC1, ECB2, ATECB2 ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g01500 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g34280 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g02808 EMB2758 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g03406 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g13015 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g03628 REME1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g14586 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g27062 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ppi_g40150 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g62370 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g10509 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g13564 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g23134 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g40244 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g51690 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Solyc07g006990.3.1 Solyc07g006990 Putative pentatricopeptide repeat-containing protein... 0.03 OrthoFinder output from all 47 species
Solyc07g008890.3.1 Solyc07g008890 Pentatricopeptide repeat-containing protein At4g33170... 0.03 OrthoFinder output from all 47 species
Solyc07g009220.2.1 Solyc07g009220 Pentatricopeptide repeat-containing protein At2g34400... 0.03 OrthoFinder output from all 47 species
Spa_g08436 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g13872 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g13891 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g15227 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g16563 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g24508 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g50396 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g50449 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g54636 VAC1, ECB2, ATECB2 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g17867 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Zm00001e005246_P001 Zm00001e005246 Pentatricopeptide repeat-containing protein At2g41080... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000381 regulation of alternative mRNA splicing, via spliceosome IEP HCCA
BP GO:0001510 RNA methylation IEP HCCA
CC GO:0005634 nucleus IEP HCCA
BP GO:0006812 monoatomic cation transport IEP HCCA
MF GO:0008324 monoatomic cation transmembrane transporter activity IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
BP GO:0016556 mRNA modification IEP HCCA
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
BP GO:0032259 methylation IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
BP GO:0043414 macromolecule methylation IEP HCCA
BP GO:0043484 regulation of RNA splicing IEP HCCA
BP GO:0048024 regulation of mRNA splicing, via spliceosome IEP HCCA
BP GO:0050684 regulation of mRNA processing IEP HCCA
BP GO:0080009 mRNA methylation IEP HCCA
BP GO:1903311 regulation of mRNA metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 377 422
IPR002885 Pentatricopeptide_repeat 173 220
IPR002885 Pentatricopeptide_repeat 480 526
IPR002885 Pentatricopeptide_repeat 275 322
IPR002885 Pentatricopeptide_repeat 683 730
IPR002885 Pentatricopeptide_repeat 556 580
IPR002885 Pentatricopeptide_repeat 585 607
IPR002885 Pentatricopeptide_repeat 74 97
IPR002885 Pentatricopeptide_repeat 250 273
No external refs found!