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  5. Msp_g15300

Msp_g15300


Description : U-Box-group-II E3 ubiquitin ligase & original description: none


Gene families : OG0004266 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004266_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Msp_g15300
Cluster HCCA: Cluster_167

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00012p00240140 evm_27.TU.AmTr_v1... U-box domain-containing protein 4 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
AT3G47820 PUB39 PLANT U-BOX 39 0.05 OrthoFinder output from all 47 species
Ala_g10271 No alias U-Box-group-II E3 ubiquitin ligase & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g04662 PUB38, ATPUB38 U-Box-group-II E3 ubiquitin ligase & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.02G042800.1 ATPUB45, PUB45,... U-Box-group-II E3 ubiquitin ligase & original... 0.06 OrthoFinder output from all 47 species
Ceric.02G044300.1 ATPUB45, PUB45,... U-Box-group-II E3 ubiquitin ligase & original... 0.07 OrthoFinder output from all 47 species
Ceric.29G047200.1 PUB39, Ceric.29G047200 U-Box-group-II E3 ubiquitin ligase & original... 0.08 OrthoFinder output from all 47 species
Dac_g08018 PUB39 U-Box-group-II E3 ubiquitin ligase & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g40033 PUB38, ATPUB38 U-Box-group-II E3 ubiquitin ligase & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g03795 PUB39 U-Box-group-II E3 ubiquitin ligase & original description: none 0.05 OrthoFinder output from all 47 species
Ehy_g16204 PUB39 U-Box-group-II E3 ubiquitin ligase & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01032537001 PUB38, ATPUB38 Protein degradation.peptide tagging.Ubiquitin... 0.02 OrthoFinder output from all 47 species
Gb_13006 PUB38, ATPUB38 E3 ubiquitin ligase (PUB) 0.02 OrthoFinder output from all 47 species
Gb_16859 PUB38, ATPUB38 E3 ubiquitin ligase (PUB) 0.03 OrthoFinder output from all 47 species
LOC_Os09g21740.1 PUB38, ATPUB38,... E3 ubiquitin ligase (PUB) 0.02 OrthoFinder output from all 47 species
Lfl_g02186 PUB38, ATPUB38 U-Box-group-II E3 ubiquitin ligase & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g25489 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
MA_252170g0010 PUB38, ATPUB38 E3 ubiquitin ligase (PUB) 0.03 OrthoFinder output from all 47 species
Mp1g18000.1 PUB38, ATPUB38 E3 ubiquitin ligase (PUB) 0.03 OrthoFinder output from all 47 species
Smo90666 PUB39 U-box domain-containing protein 38 OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
Solyc02g087200.2.1 Solyc02g087200 E3 ubiquitin ligase (PUB) 0.02 OrthoFinder output from all 47 species
Solyc03g113870.1.1 PUB38, ATPUB38,... E3 ubiquitin ligase (PUB) 0.02 OrthoFinder output from all 47 species
Spa_g15402 PUB38, ATPUB38 U-Box-group-II E3 ubiquitin ligase & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g26915 No alias U-Box-group-II E3 ubiquitin ligase & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g22128 No alias U-Box-group-II E3 ubiquiTin ligase & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0004842 ubiquitin-protein transferase activity IEA Interproscan
BP GO:0016567 protein ubiquitination IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003950 NAD+ ADP-ribosyltransferase activity IEP HCCA
MF GO:0004672 protein kinase activity IEP HCCA
MF GO:0004721 phosphoprotein phosphatase activity IEP HCCA
MF GO:0004725 protein tyrosine phosphatase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0006468 protein phosphorylation IEP HCCA
BP GO:0006470 protein dephosphorylation IEP HCCA
BP GO:0006486 protein glycosylation IEP HCCA
BP GO:0006793 phosphorus metabolic process IEP HCCA
BP GO:0006796 phosphate-containing compound metabolic process IEP HCCA
BP GO:0006810 transport IEP HCCA
BP GO:0008104 protein localization IEP HCCA
MF GO:0008883 glutamyl-tRNA reductase activity IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0015031 protein transport IEP HCCA
MF GO:0016301 kinase activity IEP HCCA
BP GO:0016310 phosphorylation IEP HCCA
BP GO:0016311 dephosphorylation IEP HCCA
MF GO:0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor IEP HCCA
MF GO:0016757 glycosyltransferase activity IEP HCCA
MF GO:0016763 pentosyltransferase activity IEP HCCA
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP HCCA
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP HCCA
MF GO:0016791 phosphatase activity IEP HCCA
MF GO:0016903 oxidoreductase activity, acting on the aldehyde or oxo group of donors IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0033013 tetrapyrrole metabolic process IEP HCCA
BP GO:0033014 tetrapyrrole biosynthetic process IEP HCCA
BP GO:0033036 macromolecule localization IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0042578 phosphoric ester hydrolase activity IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0043413 macromolecule glycosylation IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0045184 establishment of protein localization IEP HCCA
MF GO:0050661 NADP binding IEP HCCA
BP GO:0051179 localization IEP HCCA
BP GO:0051234 establishment of localization IEP HCCA
BP GO:0070085 glycosylation IEP HCCA
BP GO:0070727 cellular macromolecule localization IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR003613 Ubox_domain 9 78
No external refs found!