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  5. Msp_g15129

Msp_g15129 (ATLIG1, LIG1)


Aliases : ATLIG1, LIG1

Description : EC_6.5 ligase forming phosphoric ester bond & original description: none


Gene families : OG0001904 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001904_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Msp_g15129
Cluster HCCA: Cluster_91

Target Alias Description ECC score Gene Family Method Actions
Cba_g38330 AtLIG6, LIG6 EC_6.5 ligase forming phosphoric ester bond & original... 0.04 OrthoFinder output from all 47 species
Ceric.28G053000.1 ATLIG1, LIG1,... EC_6.5 ligase forming phosphoric ester bond & original... 0.02 OrthoFinder output from all 47 species
Dcu_g37401 AtLIG6, LIG6 EC_6.5 ligase forming phosphoric ester bond & original... 0.04 OrthoFinder output from all 47 species
GSVIVT01030942001 AtLIG6, LIG6 DNA damage response.DNA repair mechanisms.nonhomologous... 0.03 OrthoFinder output from all 47 species
GSVIVT01031470001 ATLIG1, LIG1 DNA damage response.DNA repair mechanisms.base excision... 0.03 OrthoFinder output from all 47 species
Lfl_g09242 ATLIG1, LIG1 EC_6.5 ligase forming phosphoric ester bond & original... 0.03 OrthoFinder output from all 47 species
Ore_g16105 ATLIG1, LIG1 EC_6.5 ligase forming phosphoric ester bond & original... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0041.g012541 ATLIG1, LIG1 EC_6.5 ligase forming phosphoric ester bond & original... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003910 DNA ligase (ATP) activity IEA Interproscan
BP GO:0006281 DNA repair IEA Interproscan
BP GO:0006310 DNA recombination IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
BP GO:0008104 protein localization IEP HCCA
BP GO:0015031 protein transport IEP HCCA
BP GO:0016192 vesicle-mediated transport IEP HCCA
BP GO:0033036 macromolecule localization IEP HCCA
BP GO:0045184 establishment of protein localization IEP HCCA
BP GO:0046907 intracellular transport IEP HCCA
BP GO:0051641 cellular localization IEP HCCA
BP GO:0051649 establishment of localization in cell IEP HCCA
BP GO:0070727 cellular macromolecule localization IEP HCCA
BP GO:0071702 organic substance transport IEP HCCA
BP GO:0071705 nitrogen compound transport IEP HCCA
InterPro domains Description Start Stop
IPR012310 DNA_ligase_ATP-dep_cent 474 678
IPR012308 DNA_ligase_ATP-dep_N 232 407
IPR012309 DNA_ligase_ATP-dep_C 703 814
No external refs found!