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  5. Msp_g15010

Msp_g15010 (emb2746)


Aliases : emb2746

Description : exoribonuclease *(RNase J) & original description: none


Gene families : OG0003970 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003970_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Msp_g15010
Cluster HCCA: Cluster_166

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00009p00241540 emb2746,... RNA processing.organelle machineries.ribonuclease... 0.04 OrthoFinder output from all 47 species
AT5G63420 emb2746 RNA-metabolising metallo-beta-lactamase family protein 0.07 OrthoFinder output from all 47 species
Ala_g32457 emb2746 exoribonuclease *(RNase J) & original description: none 0.04 OrthoFinder output from all 47 species
Cre16.g683050 emb2746 RNA processing.organelle machineries.ribonuclease... 0.02 OrthoFinder output from all 47 species
Ehy_g02934 emb2746 exoribonuclease *(RNase J) & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01008515001 emb2746 Vesicle trafficking.target membrane tethering.DSL1... 0.04 OrthoFinder output from all 47 species
Gb_29169 emb2746 exo-/endoribonuclease (RNase J) 0.03 OrthoFinder output from all 47 species
LOC_Os02g33610.1 emb2746, LOC_Os02g33610 exo-/endoribonuclease (RNase J) 0.02 OrthoFinder output from all 47 species
MA_10429859g0010 emb2746 exo-/endoribonuclease (RNase J) 0.04 OrthoFinder output from all 47 species
MA_10430099g0010 emb2746 no description available(sp|q84w56|rnj_arath : 150.0) 0.07 OrthoFinder output from all 47 species
Mp3g10830.1 emb2746 exo-/endoribonuclease (RNase J) 0.03 OrthoFinder output from all 47 species
Nbi_g25599 emb2746 exoribonuclease *(RNase J) & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g40893 emb2746 exoribonuclease *(RNase J) & original description: none 0.05 OrthoFinder output from all 47 species
Pnu_g18484 emb2746 exoribonuclease *(RNase J) & original description: none 0.02 OrthoFinder output from all 47 species
Pp3c20_9790V3.1 emb2746, Pp3c20_9790 RNA-metabolising metallo-beta-lactamase family protein 0.02 OrthoFinder output from all 47 species
Ppi_g25090 emb2746 exoribonuclease *(RNase J) & original description: none 0.05 OrthoFinder output from all 47 species
Solyc03g111260.3.1 emb2746, Solyc03g111260 exo-/endoribonuclease (RNase J) 0.03 OrthoFinder output from all 47 species
Zm00001e013900_P001 emb2746, Zm00001e013900 exo-/endoribonuclease (RNase J) 0.02 OrthoFinder output from all 47 species
Zm00001e025070_P003 emb2746, Zm00001e025070 exo-/endoribonuclease (RNase J) 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0005216 monoatomic ion channel activity IEP HCCA
MF GO:0005244 voltage-gated monoatomic ion channel activity IEP HCCA
MF GO:0005247 voltage-gated chloride channel activity IEP HCCA
MF GO:0005253 monoatomic anion channel activity IEP HCCA
MF GO:0005254 chloride channel activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0006811 monoatomic ion transport IEP HCCA
BP GO:0006820 monoatomic anion transport IEP HCCA
BP GO:0006821 chloride transport IEP HCCA
MF GO:0008308 voltage-gated monoatomic anion channel activity IEP HCCA
MF GO:0008509 monoatomic anion transmembrane transporter activity IEP HCCA
MF GO:0015103 inorganic anion transmembrane transporter activity IEP HCCA
MF GO:0015108 chloride transmembrane transporter activity IEP HCCA
MF GO:0015267 channel activity IEP HCCA
MF GO:0015318 inorganic molecular entity transmembrane transporter activity IEP HCCA
BP GO:0015698 inorganic anion transport IEP HCCA
MF GO:0022803 passive transmembrane transporter activity IEP HCCA
MF GO:0022832 voltage-gated channel activity IEP HCCA
MF GO:0022836 gated channel activity IEP HCCA
MF GO:0022839 monoatomic ion gated channel activity IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
InterPro domains Description Start Stop
IPR011108 RMMBL 473 529
IPR044822 Myb_DNA-bind_4 898 983
IPR001279 Metallo-B-lactamas 148 284
No external refs found!