1. Home
  2. Species
  3. Microlepia speluncae
  4. Sequence
  5. Msp_g14816

Msp_g14816 (GCT)


Aliases : GCT

Description : component *(MED13) of kinase module of MEDIATOR transcription co-activator complex & original description: none


Gene families : OG0005581 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005581_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Msp_g14816
Cluster HCCA: Cluster_164

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00198p00028070 GCT,... RNA biosynthesis.RNA polymerase II-dependent... 0.05 OrthoFinder output from all 47 species
AT1G55325 GCT RNA polymerase II transcription mediators 0.1 OrthoFinder output from all 47 species
Ala_g37172 GCT component *(MED13) of kinase module of MEDIATOR... 0.11 OrthoFinder output from all 47 species
Aop_g09012 GCT component *(MED13) of kinase module of MEDIATOR... 0.04 OrthoFinder output from all 47 species
Ceric.39G047500.1 GCT, Ceric.39G047500 component *(MED13) of kinase module of MEDIATOR... 0.08 OrthoFinder output from all 47 species
Cre02.g080300 No alias No description available 0.02 OrthoFinder output from all 47 species
GSVIVT01025465001 GCT RNA biosynthesis.RNA polymerase II-dependent... 0.09 OrthoFinder output from all 47 species
Gb_30550 GCT component MED13 of kinase module of MEDIATOR... 0.08 OrthoFinder output from all 47 species
LOC_Os05g37500.1 GCT, LOC_Os05g37500 component MED13 of kinase module of MEDIATOR... 0.05 OrthoFinder output from all 47 species
Len_g28451 GCT component *(MED13) of kinase module of MEDIATOR... 0.08 OrthoFinder output from all 47 species
MA_577306g0010 GCT no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
MA_84527g0010 GCT component MED13 of kinase module of MEDIATOR... 0.07 OrthoFinder output from all 47 species
Mp1g01940.1 GCT component MED13 of kinase module of MEDIATOR... 0.09 OrthoFinder output from all 47 species
Ore_g36609 GCT component *(MED13) of kinase module of MEDIATOR... 0.08 OrthoFinder output from all 47 species
Ppi_g03289 GCT component *(MED13) of kinase module of MEDIATOR... 0.06 OrthoFinder output from all 47 species
Smo447924 GCT RNA biosynthesis.RNA polymerase II-dependent... 0.05 OrthoFinder output from all 47 species
Solyc04g039950.4.1 GCT, Solyc04g039950 component MED13 of kinase module of MEDIATOR... 0.11 OrthoFinder output from all 47 species
Zm00001e036721_P002 GCT, Zm00001e036721 component MED13 of kinase module of MEDIATOR... 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003712 transcription coregulator activity IEA Interproscan
BP GO:0006357 regulation of transcription by RNA polymerase II IEA Interproscan
CC GO:0016592 mediator complex IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140658 ATP-dependent chromatin remodeler activity IEP HCCA
InterPro domains Description Start Stop
IPR009401 Med13_C 1611 1706
IPR041285 MID_MedPIWI 1215 1326
IPR041285 MID_MedPIWI 1334 1454
No external refs found!