1. Home
  2. Species
  3. Microlepia speluncae
  4. Sequence
  5. Msp_g14173

Msp_g14173 (ATMBD6, MBD6)


Aliases : ATMBD6, MBD6

Description : methylation reader *(MBD5-6) & original description: none


Gene families : OG0000559 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000559_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Msp_g14173

Target Alias Description ECC score Gene Family Method Actions
Dac_g14846 ATMBD6, MBD6 methylation reader *(MBD5-6) & original description: none 0.05 OrthoFinder output from all 47 species
Ehy_g06705 MBD05, MBD5, ATMBD5 methylation reader *(MBD5-6) & original description: none 0.02 OrthoFinder output from all 47 species
Solyc03g025970.3.1 MBD13, Solyc03g025970 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Tin_g01006 ATMBD6, MBD6 methylation reader *(MBD5-6) & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g08719 MBD05, MBD5, ATMBD5 methylation reader *(MBD5-6) & original description: none 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP HCCA
BP GO:0006629 lipid metabolic process IEP HCCA
BP GO:0006644 phospholipid metabolic process IEP HCCA
BP GO:0006650 glycerophospholipid metabolic process IEP HCCA
BP GO:0016192 vesicle-mediated transport IEP HCCA
MF GO:0016307 phosphatidylinositol phosphate kinase activity IEP HCCA
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP HCCA
BP GO:0019637 organophosphate metabolic process IEP HCCA
MF GO:0033926 glycopeptide alpha-N-acetylgalactosaminidase activity IEP HCCA
BP GO:0044255 cellular lipid metabolic process IEP HCCA
BP GO:0046486 glycerolipid metabolic process IEP HCCA
BP GO:0046488 phosphatidylinositol metabolic process IEP HCCA
MF GO:0140103 catalytic activity, acting on a glycoprotein IEP HCCA
InterPro domains Description Start Stop
IPR001739 Methyl_CpG_DNA-bd 364 414
No external refs found!