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  5. Msp_g14172

Msp_g14172


Description : not classified & original description: none


Gene families : OG0000629 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000629_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Msp_g14172
Cluster HCCA: Cluster_49

Target Alias Description ECC score Gene Family Method Actions
AT2G35920 No alias RNA helicase family protein 0.02 OrthoFinder output from all 47 species
Ala_g08302 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Azfi_s0022.g015910 No alias not classified & original description: CDS=1-1104 0.05 OrthoFinder output from all 47 species
Azfi_s0022.g015912 No alias not classified & original description: CDS=1-2058 0.03 OrthoFinder output from all 47 species
Cba_g11503 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.23G070100.1 Ceric.23G070100 not classified & original description: pacid=50609964... 0.03 OrthoFinder output from all 47 species
Gb_40990 No alias DExH-box ATP-dependent RNA helicase DExH1 OS=Arabidopsis... 0.06 OrthoFinder output from all 47 species
LOC_Os04g35260.1 LOC_Os04g35260 DExH-box ATP-dependent RNA helicase DExH7, chloroplastic... 0.02 OrthoFinder output from all 47 species
Len_g47532 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g04976 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_177779g0010 No alias DExH-box ATP-dependent RNA helicase DExH1 OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species
Ore_g43492 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g44903 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g12240 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pnu_g08117 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0181.g024829 No alias not classified & original description: CDS=1-315 0.03 OrthoFinder output from all 47 species
Solyc03g118920.3.1 Solyc03g118920 DExH-box ATP-dependent RNA helicase DExH3 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Spa_g26916 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g47720 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0005886 plasma membrane IEP HCCA
BP GO:0008104 protein localization IEP HCCA
BP GO:0009306 protein secretion IEP HCCA
BP GO:0015031 protein transport IEP HCCA
MF GO:0016887 ATP hydrolysis activity IEP HCCA
BP GO:0032940 secretion by cell IEP HCCA
BP GO:0033036 macromolecule localization IEP HCCA
BP GO:0035592 establishment of protein localization to extracellular region IEP HCCA
BP GO:0045184 establishment of protein localization IEP HCCA
BP GO:0046903 secretion IEP HCCA
BP GO:0051641 cellular localization IEP HCCA
BP GO:0070727 cellular macromolecule localization IEP HCCA
BP GO:0071692 protein localization to extracellular region IEP HCCA
BP GO:0071702 organic substance transport IEP HCCA
BP GO:0071705 nitrogen compound transport IEP HCCA
BP GO:0140352 export from cell IEP HCCA
InterPro domains Description Start Stop
IPR007502 Helicase-assoc_dom 711 784
IPR001650 Helicase_C 517 647
IPR011709 DEAD-box_helicase_OB_fold 867 948
IPR011545 DEAD/DEAH_box_helicase_dom 257 410
IPR014720 dsRBD_dom 1043 1104
No external refs found!