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  5. Msp_g13197

Msp_g13197 (PAP(IV), nPAP)


Aliases : PAP(IV), nPAP

Description : poly(A) RNA polymerase & original description: none


Gene families : OG0000731 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000731_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Msp_g13197
Cluster HCCA: Cluster_29

Target Alias Description ECC score Gene Family Method Actions
AT2G25850 PAPS2 poly(A) polymerase 2 0.02 OrthoFinder output from all 47 species
AT4G32850 PAP(IV), nPAP nuclear poly(a) polymerase 0.02 OrthoFinder output from all 47 species
Cba_g62706 PAP(IV), nPAP poly(A) RNA polymerase & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g01604 PAPS1 poly(A) RNA polymerase & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g15324 PAPS1 poly(A) RNA polymerase & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g27060 No alias poly(A) RNA polymerase & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e030659_P006 PAP(IV), nPAP,... poly(A) RNA polymerase 0.02 OrthoFinder output from all 47 species
Zm00001e037202_P005 PAP(IV), nPAP,... poly(A) RNA polymerase 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
BP GO:0043631 RNA polyadenylation IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP HCCA
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP HCCA
BP GO:0000398 mRNA splicing, via spliceosome IEP HCCA
MF GO:0003950 NAD+ ADP-ribosyltransferase activity IEP HCCA
CC GO:0005681 spliceosomal complex IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0008380 RNA splicing IEP HCCA
BP GO:0009966 regulation of signal transduction IEP HCCA
BP GO:0009967 positive regulation of signal transduction IEP HCCA
BP GO:0010646 regulation of cell communication IEP HCCA
BP GO:0010647 positive regulation of cell communication IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
MF GO:0016763 pentosyltransferase activity IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
BP GO:0023051 regulation of signaling IEP HCCA
BP GO:0023056 positive regulation of signaling IEP HCCA
BP GO:0048518 positive regulation of biological process IEP HCCA
BP GO:0048522 positive regulation of cellular process IEP HCCA
BP GO:0048583 regulation of response to stimulus IEP HCCA
BP GO:0048584 positive regulation of response to stimulus IEP HCCA
BP GO:0080134 regulation of response to stress IEP HCCA
BP GO:0080135 regulation of cellular response to stress IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
BP GO:2000638 regulation of SREBP signaling pathway IEP HCCA
BP GO:2000640 positive regulation of SREBP signaling pathway IEP HCCA
InterPro domains Description Start Stop
IPR007012 PolA_pol_cen_dom 41 187
IPR007010 PolA_pol_RNA-bd_dom 248 317
IPR007010 PolA_pol_RNA-bd_dom 190 247
No external refs found!