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Msp_g11709


Description : pre-60S ribosomal subunit assembly factor *(SMO4) & original description: none


Gene families : OG0004538 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004538_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Msp_g11709
Cluster HCCA: Cluster_71

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00077p00038730 evm_27.TU.AmTr_v1... Ribosome biogenesis protein NOP53 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
AT2G40430 No alias CONTAINS InterPro DOMAIN/s: P60-like... 0.02 OrthoFinder output from all 47 species
Als_g01580 No alias pre-60S ribosomal subunit assembly factor *(SMO4) &... 0.02 OrthoFinder output from all 47 species
Aob_g15568 No alias pre-60S ribosomal subunit assembly factor *(SMO4) &... 0.03 OrthoFinder output from all 47 species
Azfi_s0057.g034252 No alias pre-60S ribosomal subunit assembly factor *(SMO4) &... 0.05 OrthoFinder output from all 47 species
Dac_g11687 No alias pre-60S ribosomal subunit assembly factor *(SMO4) &... 0.06 OrthoFinder output from all 47 species
Ehy_g01055 No alias pre-60S ribosomal subunit assembly factor *(SMO4) &... 0.02 OrthoFinder output from all 47 species
Nbi_g07497 No alias pre-60S ribosomal subunit assembly factor *(SMO4) &... 0.03 OrthoFinder output from all 47 species
Ore_g10103 No alias pre-60S ribosomal subunit assembly factor *(SMO4) &... 0.02 OrthoFinder output from all 47 species
Sam_g52543 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0004478 methionine adenosyltransferase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
BP GO:0006457 protein folding IEP HCCA
BP GO:0006556 S-adenosylmethionine biosynthetic process IEP HCCA
BP GO:0006790 sulfur compound metabolic process IEP HCCA
MF GO:0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups IEP HCCA
MF GO:0031072 heat shock protein binding IEP HCCA
MF GO:0044183 protein folding chaperone IEP HCCA
BP GO:0044272 sulfur compound biosynthetic process IEP HCCA
BP GO:0046500 S-adenosylmethionine metabolic process IEP HCCA
MF GO:0051082 unfolded protein binding IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0140662 ATP-dependent protein folding chaperone IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR011687 Nop53/GLTSCR2 9 352
No external refs found!