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  5. Msp_g11440

Msp_g11440 (ATXYN1, RXF12)


Aliases : ATXYN1, RXF12

Description : endo-beta-1,4-xylanase & original description: none


Gene families : OG0001478 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001478_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Msp_g11440
Cluster HCCA: Cluster_5

Target Alias Description ECC score Gene Family Method Actions
Adi_g073081 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g13768 ATXYN1, RXF12 endo-beta-1,4-xylanase & original description: none 0.02 OrthoFinder output from all 47 species
Gb_13086 ATXYN1, RXF12 endo-beta-1,4-xylanase 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003924 GTPase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0016746 acyltransferase activity IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR001000 GH10_dom 551 814
IPR003305 CenC_carb-bd 352 494
IPR003305 CenC_carb-bd 185 318
IPR003305 CenC_carb-bd 3 143
No external refs found!