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  5. Msp_g11279

Msp_g11279


Description : storage vacuole protein sorting receptor *(RMR) & original description: none


Gene families : OG0000625 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000625_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Msp_g11279

Target Alias Description ECC score Gene Family Method Actions
AT1G35630 No alias Protease-associated (PA) RING/U-box zinc finger family protein 0.02 OrthoFinder output from all 47 species
Adi_g006502 No alias storage vacuole protein sorting receptor *(RMR) &... 0.03 OrthoFinder output from all 47 species
Aspi01Gene07230.t1 Aspi01Gene07230 not classified & original description: none 0.04 OrthoFinder output from all 47 species
LOC_Os03g07130.2 LOC_Os03g07130 vacuolar sorting receptor (RMR) 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000270 peptidoglycan metabolic process IEP HCCA
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP HCCA
BP GO:0006022 aminoglycan metabolic process IEP HCCA
BP GO:0009254 peptidoglycan turnover IEP HCCA
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP HCCA
CC GO:0019867 outer membrane IEP HCCA
BP GO:0030203 glycosaminoglycan metabolic process IEP HCCA
BP GO:1901135 carbohydrate derivative metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR001841 Znf_RING 232 275
IPR003137 PA_domain 85 144
No external refs found!