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  5. Msp_g10039

Msp_g10039 (RPL23AB)


Aliases : RPL23AB

Description : component *(uL23) of large ribosomal-subunit (LSU) proteome & original description: none


Gene families : OG0001401 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001401_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Msp_g10039
Cluster HCCA: Cluster_33

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00001p00069970 RPL23AB,... Protein biosynthesis.cytosolic ribosome.large subunit... 0.15 OrthoFinder output from all 47 species
AMTR_s00029p00132520 RPL23AB,... Protein biosynthesis.cytosolic ribosome.large subunit... 0.13 OrthoFinder output from all 47 species
AT2G39460 RPL23A, RPL23AA, ATRPL23A ribosomal protein L23AA 0.23 OrthoFinder output from all 47 species
AT3G55280 RPL23AB ribosomal protein L23AB 0.18 OrthoFinder output from all 47 species
Adi_g005345 RPL23AB component *(uL23) of large ribosomal-subunit (LSU)... 0.07 OrthoFinder output from all 47 species
Adi_g030286 RPL23AB component *(uL23) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Adi_g128529 RPL23AB component *(uL23) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Aev_g41350 RPL23AB component *(uL23) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Ala_g31538 RPL23AB component *(uL23) of large ribosomal-subunit (LSU)... 0.1 OrthoFinder output from all 47 species
Als_g12004 RPL23AB component *(uL23) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Als_g25154 RPL23AB component *(uL23) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
Aop_g12745 RPL23AB component *(uL23) of large ribosomal-subunit (LSU)... 0.07 OrthoFinder output from all 47 species
Aop_g18428 RPL23AB component *(uL23) of large ribosomal-subunit (LSU)... 0.18 OrthoFinder output from all 47 species
Aop_g19896 RPL23AB component *(uL23) of large ribosomal-subunit (LSU)... 0.13 OrthoFinder output from all 47 species
Cba_g21462 RPL23AB component *(uL23) of large ribosomal-subunit (LSU)... 0.07 OrthoFinder output from all 47 species
Cba_g65528 RPL23A, RPL23AA, ATRPL23A not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ceric.12G093600.1 RPL23AB, Ceric.12G093600 component *(uL23) of large ribosomal-subunit (LSU)... 0.14 OrthoFinder output from all 47 species
Ceric.14G096300.1 RPL23AB, Ceric.14G096300 component *(uL23) of large ribosomal-subunit (LSU)... 0.14 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000037.39 RPL23AB Protein biosynthesis.cytosolic ribosome.large subunit... 0.18 OrthoFinder output from all 47 species
Cre06.g282500 RPL23A, RPL23AA, ATRPL23A Protein biosynthesis.cytosolic ribosome.large subunit... 0.17 OrthoFinder output from all 47 species
Dac_g14569 RPL23AB component *(uL23) of large ribosomal-subunit (LSU)... 0.1 OrthoFinder output from all 47 species
Dac_g25800 RPL23AB component *(uL23) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Dcu_g34947 RPL23AB component *(uL23) of large ribosomal-subunit (LSU)... 0.07 OrthoFinder output from all 47 species
Dcu_g41671 RPL23AB component *(uL23) of large ribosomal-subunit (LSU)... 0.06 OrthoFinder output from all 47 species
Ehy_g04260 RPL23A, RPL23AA, ATRPL23A component *(uL23) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
GSVIVT01025041001 RPL23AB Protein biosynthesis.cytosolic ribosome.large subunit... 0.03 OrthoFinder output from all 47 species
GSVIVT01025606001 No alias 60S ribosomal protein L23a-1 OS=Arabidopsis thaliana 0.06 OrthoFinder output from all 47 species
Gb_38537 RPL23AB component RPL23a of LSU proteome component 0.09 OrthoFinder output from all 47 species
LOC_Os01g24690.1 RPL23AB, LOC_Os01g24690 component RPL23a of LSU proteome component 0.13 OrthoFinder output from all 47 species
LOC_Os04g42270.2 RPL23AB, LOC_Os04g42270 component RPL23a of LSU proteome component 0.17 OrthoFinder output from all 47 species
Len_g05701 RPL23AB component *(uL23) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Len_g06901 RPL23AB component *(uL23) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Len_g26873 RPL23AB component *(uL23) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Lfl_g03650 RPL23AB component *(uL23) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Lfl_g27395 RPL23AB component *(uL23) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
MA_10430928g0010 RPL23AB component RPL23a of LSU proteome component 0.18 OrthoFinder output from all 47 species
MA_10436962g0020 RPL23A, RPL23AA, ATRPL23A component RPL23a of LSU proteome component 0.05 OrthoFinder output from all 47 species
Mp2g00570.1 RPL23AB component RPL23a of LSU proteome component 0.28 OrthoFinder output from all 47 species
Msp_g35076 RPL23A, RPL23AA, ATRPL23A component *(uL23) of large ribosomal-subunit (LSU)... 0.06 OrthoFinder output from all 47 species
Ore_g10109 RPL23AB component *(uL23) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Pir_g06153 RPL23AB component *(uL23) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Pp3c12_19360V3.1 RPL23AB, Pp3c12_19360 ribosomal protein L23AB 0.1 OrthoFinder output from all 47 species
Pp3c13_15920V3.1 RPL23AB, Pp3c13_15920 ribosomal protein L23AB 0.04 OrthoFinder output from all 47 species
Pp3c3_21160V3.1 RPL23AB, Pp3c3_21160 ribosomal protein L23AB 0.06 OrthoFinder output from all 47 species
Pp3c4_8620V3.1 RPL23AB, Pp3c4_8620 ribosomal protein L23AB 0.1 OrthoFinder output from all 47 species
Ppi_g14171 RPL23AB component *(uL23) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Ppi_g25146 RPL23AB component *(uL23) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Ppi_g25916 RPL23AB component *(uL23) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Ppi_g48019 RPL23AB component *(uL23) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Ppi_g52143 RPL23AB component *(uL23) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0277.g027075 RPL23AB component *(uL23) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Sam_g00769 No alias component *(uL23) of large ribosomal-subunit (LSU)... 0.11 OrthoFinder output from all 47 species
Sam_g06116 No alias component *(uL23) of large ribosomal-subunit (LSU)... 0.15 OrthoFinder output from all 47 species
Sam_g06117 No alias component *(uL23) of large ribosomal-subunit (LSU)... 0.17 OrthoFinder output from all 47 species
Sam_g22104 No alias component *(uL23) of large ribosomal-subunit (LSU)... 0.08 OrthoFinder output from all 47 species
Smo271663 RPL23AB Protein biosynthesis.cytosolic ribosome.large subunit... 0.13 OrthoFinder output from all 47 species
Solyc09g005720.3.1 RPL23AB, Solyc09g005720 component RPL23a of LSU proteome component 0.1 OrthoFinder output from all 47 species
Solyc10g086330.2.1 RPL23AB, Solyc10g086330 component RPL23a of LSU proteome component 0.12 OrthoFinder output from all 47 species
Spa_g01808 RPL23AB component *(uL23) of large ribosomal-subunit (LSU)... 0.15 OrthoFinder output from all 47 species
Spa_g10914 RPL23AB component *(uL23) of large ribosomal-subunit (LSU)... 0.15 OrthoFinder output from all 47 species
Spa_g25289 RPL23AB component *(uL23) of large ribosomal-subunit (LSU)... 0.14 OrthoFinder output from all 47 species
Spa_g31905 RPL23AB component *(uL23) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Spa_g33231 RPL23AB component *(uL23) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Spa_g45231 RPL23AB component *(uL23) of large ribosomal-subunit (LSU)... 0.09 OrthoFinder output from all 47 species
Tin_g03678 RPL23AB component *(uL23) of large ribosomal-subunit (LSU)... 0.18 OrthoFinder output from all 47 species
Zm00001e007662_P001 RPL23AB, Zm00001e007662 component RPL23a of LSU proteome component 0.07 OrthoFinder output from all 47 species
Zm00001e031062_P001 RPL23A, RPL23AA,... component RPL23a of LSU proteome component 0.02 OrthoFinder output from all 47 species
Zm00001e041164_P001 RPL23A, RPL23AA,... component RPL23a of LSU proteome component 0.13 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003746 translation elongation factor activity IEP HCCA
CC GO:0005875 microtubule associated complex IEP HCCA
BP GO:0006414 translational elongation IEP HCCA
BP GO:0007017 microtubule-based process IEP HCCA
MF GO:0008135 translation factor activity, RNA binding IEP HCCA
CC GO:0030286 dynein complex IEP HCCA
MF GO:0044183 protein folding chaperone IEP HCCA
MF GO:0045182 translation regulator activity IEP HCCA
MF GO:0090079 translation regulator activity, nucleic acid binding IEP HCCA
MF GO:0140662 ATP-dependent protein folding chaperone IEP HCCA
InterPro domains Description Start Stop
IPR013025 Ribosomal_L25/23 71 131
IPR005633 Ribosomal_L23/L25_N 12 62
No external refs found!