Msp_g08810 (CRF4)

Aliases : CRF4

Description : subgroup ERF-VI transcription factor & original description: none

Gene families : OG0000003 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Msp_g08810
Cluster	HCCA: Cluster_58

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00095p00096190	CBF4, DREB1D,...	RNA biosynthesis.transcriptional activation.AP2/ERF...	0.02	OrthoFinder output from all 47 species
AMTR_s00107p00095070	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.AP2/ERF...	0.02	OrthoFinder output from all 47 species
AT2G25820	No alias	Integrase-type DNA-binding superfamily protein	0.03	OrthoFinder output from all 47 species
AT2G44940	No alias	Integrase-type DNA-binding superfamily protein	0.03	OrthoFinder output from all 47 species
AT3G23240	ERF1, ATERF1	ethylene response factor 1	0.02	OrthoFinder output from all 47 species
Ala_g10901	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Aspi01Gene05675.t1	Aspi01Gene05675	subgroup ERF-III transcription factor & original...	0.03	OrthoFinder output from all 47 species
Aspi01Gene06522.t1	ATERF12, ERF12,...	subgroup ERF-VIII transcription factor & original...	0.03	OrthoFinder output from all 47 species
Aspi01Gene32072.t1	Aspi01Gene32072	subgroup ERF-II transcription factor *(ERF16/17/18) &...	0.03	OrthoFinder output from all 47 species
Aspi01Gene48121.t1	Aspi01Gene48121	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Aspi01Gene48933.t1	RAP2.2, Aspi01Gene48933	transcription factor component *(HRE/RAP2.12) of...	0.03	OrthoFinder output from all 47 species
Aspi01Gene58502.t1	Aspi01Gene58502	subgroup ERF-III transcription factor & original...	0.03	OrthoFinder output from all 47 species
Azfi_s0070.g036745	ATERF-9, ERF9, ATERF9	not classified & original description: CDS=1-3831	0.03	OrthoFinder output from all 47 species
Cba_g10613	ATERF12, ERF12	subgroup ERF-VIII transcription factor & original...	0.03	OrthoFinder output from all 47 species
Cba_g69639	Rap2.6L	subgroup ERF-X transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Ceric.10G018900.1	ERF2, ATERF2,...	subgroup ERF-VI transcription factor & original...	0.03	OrthoFinder output from all 47 species
Dac_g11691	DREB2A, DREB2	subgroup ERF-IV/DREB2 transcription factor & original...	0.03	OrthoFinder output from all 47 species
Dac_g20220	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
LOC_Os01g73770.1	CBF4, DREB1D,...	transcription factor (DREB)	0.03	OrthoFinder output from all 47 species
LOC_Os04g56150.1	LOC_Os04g56150	transcription factor (ERF)	0.02	OrthoFinder output from all 47 species
LOC_Os08g36920.1	RRTF1, LOC_Os08g36920	transcription factor (ERF)	0.02	OrthoFinder output from all 47 species
Len_g15213	WIN1, SHN1	subgroup ERF-V transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
MA_214063g0010	No alias	transcription factor (DREB)	0.02	OrthoFinder output from all 47 species
Msp_g03932	No alias	subgroup ERF-III transcription factor & original...	0.04	OrthoFinder output from all 47 species
Ore_g29205	No alias	subgroup ERF-I transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Ore_g38776	ERF-1, ATERF-1	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Pir_g11296	CRF4	subgroup ERF-VI transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Pir_g18798	TINY2	subgroup ERF-III transcription factor & original...	0.03	OrthoFinder output from all 47 species
Pir_g28144	DDF1	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Pir_g58283	ERF110	subgroup ERF-X transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Sacu_v1.1_s0002.g001285	No alias	not classified & original description: CDS=1-1830	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0066.g016160	ERF-1, ATERF-1	subgroup ERF-IX transcription factor & original...	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0070.g016650	ERF38, ATERF38	subgroup ERF-III transcription factor & original...	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0157.g023700	AtERF48, DREB2C	subgroup ERF-IV/DREB2 transcription factor & original...	0.02	OrthoFinder output from all 47 species
Sacu_v1.1_s0200.g025602	No alias	subgroup ERF-V transcription factor & original...	0.02	OrthoFinder output from all 47 species
Sacu_v1.1_s0225.g026324	ERF110	not classified & original description: CDS=572-2401	0.02	OrthoFinder output from all 47 species
Sam_g15306	No alias	subgroup ERF-IV/DREB2 transcription factor & original...	0.03	OrthoFinder output from all 47 species
Solyc01g005630.3.1	RAP2.11, Solyc01g005630	transcription factor (ERF). transcription factor (ERN1)	0.03	OrthoFinder output from all 47 species
Solyc03g006320.1.1	ATERF4, RAP2.5,...	transcription factor (ERF)	0.02	OrthoFinder output from all 47 species
Solyc03g116610.3.1	WIN1, SHN1,...	transcription factor (ERF). SHN-type cutin and suberin...	0.03	OrthoFinder output from all 47 species
Solyc04g051360.3.1	ABR1, Solyc04g051360	transcription factor (ERF)	0.02	OrthoFinder output from all 47 species
Solyc08g078410.2.1	Solyc08g078410	transcription factor (DREB)	0.02	OrthoFinder output from all 47 species
Solyc12g038440.1.1	HRE2, Solyc12g038440	no hits & (original description: none)	0.02	OrthoFinder output from all 47 species
Spa_g06007	CRF3	subgroup ERF-VI transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Spa_g18741	CRF3	subgroup ERF-VI transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Zm00001e003579_P001	Zm00001e003579	Ethylene-responsive transcription factor ERF015...	0.02	OrthoFinder output from all 47 species
Zm00001e015429_P001	Zm00001e015429	transcription factor (DREB)	0.03	OrthoFinder output from all 47 species
Zm00001e015946_P001	ERF110, Zm00001e015946	no hits & (original description: none)	0.03	OrthoFinder output from all 47 species
Zm00001e022016_P001	Zm00001e022016	transcription factor (DREB)	0.02	OrthoFinder output from all 47 species
Zm00001e023159_P001	Zm00001e023159	transcription factor (DREB)	0.02	OrthoFinder output from all 47 species
Zm00001e023816_P001	Zm00001e023816	no hits & (original description: none)	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003700	DNA-binding transcription factor activity	IEA	Interproscan
BP	GO:0006355	regulation of DNA-templated transcription	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR001471	AP2/ERF_dom	163	213

External Links

No external refs found!

Msp_g08810 (CRF4)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation