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  5. Msp_g08410

Msp_g08410


Description : not classified & original description: none


Gene families : OG0001071 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001071_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Msp_g08410

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00027p00248120 evm_27.TU.AmTr_v1... Uncharacterized TPR repeat-containing protein At1g05150... 0.03 OrthoFinder output from all 47 species
Als_g15660 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g07948 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g08315 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ceric.34G037500.1 Ceric.34G037500 not classified & original description: pacid=50624070... 0.04 OrthoFinder output from all 47 species
Dcu_g01881 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g04084 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g02917 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g17996 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g47058 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g08300 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0004809 tRNA (guanine-N2-)-methyltransferase activity IEP HCCA
CC GO:0005634 nucleus IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0008033 tRNA processing IEP HCCA
BP GO:0008150 biological_process IEP HCCA
MF GO:0008168 methyltransferase activity IEP HCCA
MF GO:0008170 N-methyltransferase activity IEP HCCA
MF GO:0008173 RNA methyltransferase activity IEP HCCA
MF GO:0008175 tRNA methyltransferase activity IEP HCCA
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
MF GO:0016423 tRNA (guanine) methyltransferase activity IEP HCCA
MF GO:0016741 transferase activity, transferring one-carbon groups IEP HCCA
BP GO:0022613 ribonucleoprotein complex biogenesis IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0042254 ribosome biogenesis IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
BP GO:0044085 cellular component biogenesis IEP HCCA
MF GO:0051287 NAD binding IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR019734 TPR_repeat 387 420
IPR013105 TPR_2 277 305
No external refs found!