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  5. Msp_g07432

Msp_g07432


Description : component *(Sm-D3) of U1/U2/U4/U5-associated Sm accessory ribonucleoprotein complex & original description: none


Gene families : OG0003441 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003441_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Msp_g07432

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00001p00047670 evm_27.TU.AmTr_v1... RNA processing.RNA splicing.U1/U2/U4/U5-associated Sm... 0.05 OrthoFinder output from all 47 species
AT1G20580 No alias Small nuclear ribonucleoprotein family protein 0.04 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020912.17 No alias RNA processing.RNA splicing.U1/U2/U4/U5-associated Sm... 0.01 OrthoFinder output from all 47 species
Cre10.g455300 No alias RNA processing.RNA splicing.U1/U2/U4/U5-associated Sm... 0.01 OrthoFinder output from all 47 species
GSVIVT01013364001 No alias RNA processing.RNA splicing.U1/U2/U4/U5-associated Sm... 0.03 OrthoFinder output from all 47 species
LOC_Os02g01250.1 LOC_Os02g01250 component Sm-D3 of U1/U2/U4/U5-associated Sm accessory... 0.06 OrthoFinder output from all 47 species
MA_159534g0010 No alias component Sm-D3 of U1/U2/U4/U5-associated Sm accessory... 0.02 OrthoFinder output from all 47 species
Mp1g11210.1 No alias component Sm-D3 of U1/U2/U4/U5-associated Sm accessory... 0.05 OrthoFinder output from all 47 species
Zm00001e013395_P002 Zm00001e013395 component Sm-D3 of U1/U2/U4/U5-associated Sm accessory... 0.04 OrthoFinder output from all 47 species
Zm00001e038613_P001 Zm00001e038613 component Sm-D3 of U1/U2/U4/U5-associated Sm accessory... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003830 beta-1,4-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity IEP HCCA
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
BP GO:0006486 protein glycosylation IEP HCCA
BP GO:0006487 protein N-linked glycosylation IEP HCCA
MF GO:0008194 UDP-glycosyltransferase activity IEP HCCA
MF GO:0008375 acetylglucosaminyltransferase activity IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
MF GO:0016757 glycosyltransferase activity IEP HCCA
MF GO:0016758 hexosyltransferase activity IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
BP GO:0043413 macromolecule glycosylation IEP HCCA
MF GO:0043565 sequence-specific DNA binding IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0070085 glycosylation IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0140103 catalytic activity, acting on a glycoprotein IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR001163 LSM_dom_euk/arc 11 74
No external refs found!