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  5. Msp_g06604

Msp_g06604 (PTAC14)


Aliases : PTAC14

Description : cofactor of plastid-encoded RNA polymerase *(PAP7/TAC14) & original description: none


Gene families : OG0004603 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004603_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Msp_g06604

Target Alias Description ECC score Gene Family Method Actions
AT4G20130 PTAC14 plastid transcriptionally active 14 0.04 OrthoFinder output from all 47 species
Adi_g007211 PTAC14 cofactor of plastid-encoded RNA polymerase *(PAP7/TAC14)... 0.03 OrthoFinder output from all 47 species
LOC_Os05g50980.1 PTAC14, LOC_Os05g50980 PAP7/TAC14 cofactor of plastid-encoded RNA polymerase 0.02 OrthoFinder output from all 47 species
Mp7g10810.1 PTAC14 PAP7/TAC14 cofactor of plastid-encoded RNA polymerase 0.03 OrthoFinder output from all 47 species
Nbi_g12531 PTAC14 cofactor of plastid-encoded RNA polymerase *(PAP7/TAC14)... 0.03 OrthoFinder output from all 47 species
Solyc02g081920.3.1 PTAC14, Solyc02g081920 PAP7/TAC14 cofactor of plastid-encoded RNA polymerase 0.05 OrthoFinder output from all 47 species
Zm00001e026650_P001 PTAC14, Zm00001e026650 PAP7/TAC14 cofactor of plastid-encoded RNA polymerase 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0003916 DNA topoisomerase activity IEP HCCA
MF GO:0003918 DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006265 DNA topological change IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
MF GO:0008194 UDP-glycosyltransferase activity IEP HCCA
MF GO:0010277 chlorophyllide a oxygenase [overall] activity IEP HCCA
MF GO:0016491 oxidoreductase activity IEP HCCA
MF GO:0016701 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen IEP HCCA
MF GO:0016703 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of one atom of oxygen (internal monooxygenases or internal mixed function oxidases) IEP HCCA
MF GO:0016853 isomerase activity IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
BP GO:0071103 DNA conformation change IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
InterPro domains Description Start Stop
IPR015353 Rubisco_LSMT_subst-bd 414 475
IPR001214 SET_dom 108 331
No external refs found!